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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU93456 Sorghum cytosol, extracellular 80.08 96.7
OQU93457 Sorghum extracellular 98.05 94.36
OQU93458 Sorghum extracellular 97.66 93.98
OQU93459 Sorghum extracellular 97.66 93.98
EER95683 Sorghum extracellular 97.66 93.98
EER95684 Sorghum extracellular 96.88 93.23
Zm00001d017736_P001 Maize cytosol 64.06 84.97
Zm00001d017735_P001 Maize extracellular 80.08 81.03
Zm00001d048384_P001 Maize extracellular 84.77 80.67
Zm00001d017740_P001 Maize extracellular 79.69 80.63
Zm00001d017737_P001 Maize extracellular 83.98 79.63
Zm00001d040609_P001 Maize extracellular 83.59 79.55
Zm00001d040608_P001 Maize extracellular 82.81 79.1
Zm00001d017732_P001 Maize extracellular 83.2 78.89
Zm00001d017733_P001 Maize extracellular 83.2 78.89
Zm00001d017731_P001 Maize extracellular 66.41 72.96
Os03t0106500-01 Rice plasma membrane 65.23 62.55
Os03t0106900-00 Rice extracellular 65.23 62.55
Os03t0106800-01 Rice plasma membrane 64.06 61.42
HORVU4Hr1G086830.1 Barley extracellular 62.89 60.53
TraesCS4B01G362100.1 Wheat extracellular 63.28 60.0
TraesCS4B01G362500.1 Wheat extracellular 62.89 59.63
TraesCS4B01G362600.1 Wheat extracellular, unclear 62.89 59.63
TraesCS5A01G530700.1 Wheat extracellular 62.89 59.63
TraesCS4D01G355700.1 Wheat extracellular 62.11 59.33
TraesCS4D01G355100.1 Wheat extracellular 62.5 59.26
TraesCS4D01G355800.1 Wheat extracellular 62.5 59.26
TraesCS5A01G530100.1 Wheat extracellular 62.5 59.26
HORVU4Hr1G086930.1 Barley extracellular 62.89 58.76
Os03t0106700-00 Rice extracellular 51.95 58.33
HORVU4Hr1G087070.2 Barley extracellular, mitochondrion, peroxisome 62.89 57.3
EER94537 Sorghum extracellular 54.69 52.63
KXG38972 Sorghum extracellular 54.3 52.26
KXG38969 Sorghum extracellular 53.91 51.88
EER91942 Sorghum extracellular 49.22 47.37
Zm00001d017734_P001 Maize cytosol 82.81 46.29
EER94506 Sorghum extracellular 50.39 45.74
EER91949 Sorghum extracellular 50.39 45.74
EER91947 Sorghum extracellular 48.05 45.72
EER91945 Sorghum extracellular 48.83 45.29
EER94500 Sorghum extracellular 50.0 44.14
OQU92157 Sorghum extracellular 51.17 42.53
KXG40417 Sorghum mitochondrion 49.22 42.42
KXG40416 Sorghum extracellular, vacuole 51.56 41.25
EES05315 Sorghum extracellular 51.17 41.2
KXG38933 Sorghum mitochondrion 50.78 40.75
EER91948 Sorghum extracellular 43.36 39.93
EES11234 Sorghum extracellular 41.02 39.92
OQU92156 Sorghum plastid 49.61 39.08
KXG19818 Sorghum extracellular 39.45 39.0
EES11235 Sorghum extracellular 44.14 38.83
EER88254 Sorghum extracellular 39.06 38.61
EES07509 Sorghum extracellular 39.45 38.26
EES07508 Sorghum extracellular 42.97 37.41
EES05780 Sorghum extracellular 42.97 37.29
EES11233 Sorghum extracellular 41.02 36.46
GSMUA_AchrUn_... Banana extracellular 12.5 34.78
EER98447 Sorghum extracellular 39.45 32.9
EER93754 Sorghum extracellular 39.06 32.68
EER98449 Sorghum extracellular 39.45 32.37
EES05488 Sorghum extracellular 33.98 31.87
KXG37946 Sorghum extracellular 39.84 31.38
EER99370 Sorghum extracellular 24.22 22.63
EER95568 Sorghum extracellular 23.44 22.22
KXG38992 Sorghum extracellular 22.27 20.21
OQU89980 Sorghum extracellular, plasma membrane, vacuole 16.41 18.67
KXG20919 Sorghum plastid 21.09 12.19
Protein Annotations
Gene3D:2.40.40.10Gene3D:2.60.40.760MapMan:35.1UniProt:A0A1Z5SCF1InterPro:Expan_Lol_pIInterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBDInterPro:Expansin_CBD_sfGO:GO:0000003GO:GO:0005575GO:GO:0005576GO:GO:0008150
GO:GO:0019953InterPro:IPR007112InterPro:IPR007117InterPro:IPR036749InterPro:IPR036908InterPro:LolPI
EnsemblPlants:OQU93455ProteinID:OQU93455ProteinID:OQU93455.1PFAM:PF01357PFAM:PF03330PRINTS:PR00829
PRINTS:PR01225PFscan:PS50842PFscan:PS50843PANTHER:PTHR31692PANTHER:PTHR31692:SF21InterPro:RlpA-like_DPBB
InterPro:RlpA-like_sfSMART:SM00837EnsemblPlantsGene:SORBI_3001G539600SUPFAM:SSF49590SUPFAM:SSF50685SignalP:SignalP-noTM
UniParc:UPI000B8B9D14SEG:seg::::
Description
hypothetical protein
Coordinates
chr1:+:80240703..80241503
Molecular Weight (calculated)
27763.2 Da
IEP (calculated)
6.891
GRAVY (calculated)
-0.272
Length
256 amino acids
Sequence
(BLAST)
001: MGVNMMSWSM KVALVVALVF LVAPGKNITA TYGSDWLEAK ATWYGKPTGA GPDDNGGACG YKDVNKAPFN SMGACGNLPI FKDGLGCGSC FEIKCDKPAE
101: CSGEAVVVHI TDMNYEQIAA YHFDLAGTAF GAMAKKGEEE KLRKAGIIDM QFRRVKCKYG EKVTFHVEKG SNPNYLALLV KYVDGDGDVV GVDIKEKGGE
201: AYQPLKHSWG AIWRKDSDKP IKFPVTIQIT TEGGTKTAYE DVIPEGWKAD TTYTAK
Best Arabidopsis Sequence Match ( AT1G65680.1 )
(BLAST)
001: MTILVVDRYY MLMNLLFALT CLLLNLTHCF SPKKFNISAA TTSDSDWSIA GSTWYGNPTG YGSDGGACGY GNAVAQPPFS KMVSAGGPSL FKSGKGCGAC
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF
Arabidopsis Description
EXPB2Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.