Factsheet for TraesCS4B01G362600.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, unclear
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G362500.1	Wheat	extracellular	100.0	100.0
TraesCS4B01G362100.1	Wheat	extracellular	99.63	99.63
TraesCS5A01G530100.1	Wheat	extracellular	98.15	98.15
TraesCS5A01G530700.1	Wheat	extracellular	97.78	97.78
TraesCS4D01G355100.1	Wheat	extracellular	97.04	97.04
TraesCS4D01G355800.1	Wheat	extracellular	97.04	97.04
TraesCS4D01G355700.1	Wheat	extracellular	94.81	95.52
HORVU4Hr1G086830.1	Barley	extracellular	86.67	87.97
HORVU4Hr1G086930.1	Barley	extracellular	84.81	83.58
HORVU4Hr1G087070.2	Barley	extracellular, mitochondrion, peroxisome	84.81	81.49
OQU93456	Sorghum	cytosol, extracellular	52.59	66.98
Os03t0106500-01	Rice	plasma membrane	65.56	66.29
Os03t0106900-00	Rice	extracellular	65.56	66.29
Zm00001d017736_P001	Maize	cytosol	47.04	65.8
Zm00001d017740_P001	Maize	extracellular	60.74	64.82
Zm00001d017735_P001	Maize	extracellular	60.74	64.82
Os03t0106700-00	Rice	extracellular	54.44	64.47
EER95684	Sorghum	extracellular	63.33	64.29
OQU93459	Sorghum	extracellular	62.96	63.91
OQU93458	Sorghum	extracellular	62.96	63.91
OQU93457	Sorghum	extracellular	62.96	63.91
EER95683	Sorghum	extracellular	62.96	63.91
Os03t0106800-01	Rice	plasma membrane	62.59	63.3
Zm00001d048384_P001	Maize	extracellular	62.96	63.2
OQU93455	Sorghum	extracellular	59.63	62.89
Zm00001d040609_P001	Maize	extracellular	62.22	62.45
Zm00001d040608_P001	Maize	extracellular	61.85	62.31
Zm00001d017737_P001	Maize	extracellular	61.85	61.85
TraesCS1B01G222300.1	Wheat	extracellular	60.0	61.13
Zm00001d017732_P001	Maize	extracellular	61.11	61.11
Zm00001d017733_P001	Maize	extracellular	61.11	61.11
Zm00001d017731_P001	Maize	extracellular	50.37	58.37
TraesCS2B01G480700.1	Wheat	extracellular	52.59	53.58
TraesCS3B01G014400.1	Wheat	cytosol	44.07	47.98
TraesCS6B01G046200.1	Wheat	extracellular	47.78	47.25
TraesCS6B01G046000.1	Wheat	extracellular	47.78	47.25
TraesCS6B01G046400.1	Wheat	extracellular	47.41	46.89
TraesCS6B01G046100.1	Wheat	extracellular	47.41	46.89
TraesCS6B01G046300.1	Wheat	extracellular	47.41	46.89
TraesCS3B01G014300.1	Wheat	extracellular, nucleus	47.04	46.35
TraesCS1B01G226000.2	Wheat	extracellular	46.3	46.3
TraesCS1B01G225800.1	Wheat	extracellular	44.44	44.28
TraesCS6B01G245700.1	Wheat	extracellular	47.78	43.58
TraesCS1B01G225900.1	Wheat	extracellular, mitochondrion, plastid	47.78	43.29
TraesCS1B01G225700.1	Wheat	extracellular	47.78	42.72
TraesCS4B01G375200.1	Wheat	extracellular	45.93	42.47
TraesCS3B01G526800.1	Wheat	extracellular	47.04	42.33
TraesCS3B01G524500.1	Wheat	extracellular	48.15	41.8
TraesCS2B01G432300.1	Wheat	plastid	40.37	41.6
TraesCS2B01G095600.1	Wheat	extracellular	38.89	41.18
TraesCS2B01G607400.1	Wheat	extracellular	37.78	40.96
TraesCS2B01G122100.1	Wheat	extracellular	28.52	40.31
GSMUA_AchrUn_...	Banana	extracellular	13.33	39.13
TraesCS2B01G095700.1	Wheat	extracellular	36.3	38.89
TraesCS2B01G432100.1	Wheat	extracellular	37.41	38.7
TraesCS6B01G275800.1	Wheat	extracellular	41.11	38.68
TraesCS1B01G226100.1	Wheat	extracellular	44.07	38.14
TraesCS2B01G432200.1	Wheat	extracellular, plastid	39.26	37.72
TraesCS4B01G375600.1	Wheat	extracellular	47.04	37.24
TraesCS3B01G535800.1	Wheat	extracellular	39.63	37.02
TraesCS5B01G079400.1	Wheat	extracellular, plasma membrane	46.3	36.66
TraesCS6B01G275700.1	Wheat	extracellular	38.89	36.33
Zm00001d017734_P001	Maize	cytosol	61.48	36.24
TraesCS6B01G264400.1	Wheat	extracellular	34.07	34.33
TraesCS5B01G376500.1	Wheat	extracellular	38.15	33.33
TraesCS2B01G390000.1	Wheat	extracellular	31.85	30.61
TraesCS4B01G327200.1	Wheat	extracellular	23.7	23.88
TraesCS4B01G327100.1	Wheat	golgi	23.7	23.62
TraesCS4B01G326900.1	Wheat	extracellular	23.7	23.27
TraesCS1B01G217200.1	Wheat	extracellular	20.74	20.36
TraesCS7B01G468700.1	Wheat	endoplasmic reticulum, extracellular	19.63	16.77
TraesCS7B01G469200.1	Wheat	endoplasmic reticulum, extracellular	19.26	16.3
TraesCS7B01G469100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	20.0	8.39

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:35.1	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0019953
InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	InterPro:LolPI	PFAM:PF01357
PFAM:PF03330	PRINTS:PR00829	PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692
PANTHER:PTHR31692:SF21	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685
SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4B01G362600	EnsemblPlants:TraesCS4B01G362600.1	SEG:seg	:

Description

No Description!

Coordinates

chr4B:-:651769415..651770227

Molecular Weight (calculated)

29024.4 Da

IEP (calculated)

7.988

GRAVY (calculated)

-0.425

Length

270 amino acids

Sequence
(BLAST)

001: MASSSSSVLL VAAVVAAVVC GAHGIPKVPP GPNITASPAS YGNKWLDAKT TWYGKPTGAG PKDNGGACGY KEVDKAPFHG MTSCGNIPIF KDGRGCGSCF
101: ELKCTKPEAC SGEPTMVTIT DKNEEPIAPY HFDLSGHAFG SMAKKGEEQK LRDAGEVEIK FRRVKCKYPP GTKVNFHVEK SSNENYLALV IKFLQGDGDV
201: VGVDIKQKGE DKWTELNESW GAVWRIDTPH KLIGPFSVRY TTEGGTKTVV EDVIPKGWKA DTSYEAKGGY

Best Arabidopsis Sequence Match ( AT1G65680.1 )
(BLAST)

001: MTILVVDRYY MLMNLLFALT CLLLNLTHCF SPKKFNISAA TTSDSDWSIA GSTWYGNPTG YGSDGGACGY GNAVAQPPFS KMVSAGGPSL FKSGKGCGAC
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF

Arabidopsis Description

EXPB2Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.