Factsheet for TraesCS6B01G264400.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G235800.1	Wheat	extracellular	97.76	98.13
TraesCS6D01G218500.1	Wheat	extracellular	96.27	96.27
HORVU6Hr1G060410.7	Barley	extracellular	93.66	93.66
Os02t0639500-01	Rice	extracellular	82.84	85.06
Zm00001d017377_P001	Maize	extracellular	82.46	82.46
EES05488	Sorghum	extracellular	83.58	82.05
GSMUA_AchrUn_...	Banana	extracellular	72.01	73.38
GSMUA_Achr1P00120_001	Banana	extracellular	69.4	69.92
TraesCS2B01G390000.1	Wheat	extracellular	72.76	69.39
GSMUA_Achr5P12080_001	Banana	extracellular	69.03	69.29
VIT_12s0059g00190.t01	Wine grape	extracellular	66.79	69.11
KRH26935	Soybean	extracellular	64.55	66.28
Bra026272.1-P	Field mustard	extracellular	64.93	65.66
CDY18990	Canola	extracellular	64.55	65.28
CDY58728	Canola	extracellular	64.18	64.91
CDY70556	Canola	extracellular	64.18	64.91
Bra024215.1-P	Field mustard	extracellular	64.18	64.91
Solyc07g054170.2.1	Tomato	extracellular	64.18	64.42
AT4G28250.1	Thale cress	extracellular	63.43	64.39
PGSC0003DMT400047177	Potato	extracellular	63.43	63.67
CDY05789	Canola	extracellular	62.69	63.4
Solyc10g008440.2.1	Tomato	extracellular	61.94	63.36
Bra036499.1-P	Field mustard	extracellular	62.31	63.02
CDY31940	Canola	extracellular	62.31	63.02
PGSC0003DMT400055827	Potato	extracellular	61.57	62.98
KRH22402	Soybean	extracellular	58.96	61.24
AT2G20750.1	Thale cress	extracellular	61.57	60.89
KRH25552	Soybean	extracellular	59.7	59.93
KRH55988	Soybean	extracellular	59.33	59.55
TraesCS2B01G607400.1	Wheat	extracellular	41.42	44.58
TraesCS2B01G095600.1	Wheat	extracellular	42.16	44.31
TraesCS2B01G122100.1	Wheat	extracellular	30.6	42.93
TraesCS2B01G095700.1	Wheat	extracellular	38.81	41.27
TraesCS2B01G432100.1	Wheat	extracellular	39.93	41.0
TraesCS2B01G432300.1	Wheat	plastid	39.55	40.46
TraesCS2B01G432200.1	Wheat	extracellular, plastid	42.16	40.21
TraesCS6B01G275700.1	Wheat	extracellular	41.79	38.75
TraesCS6B01G275800.1	Wheat	extracellular	41.04	38.33
TraesCS3B01G014300.1	Wheat	extracellular, nucleus	38.06	37.23
TraesCS3B01G014400.1	Wheat	cytosol	34.33	37.1
TraesCS3B01G535800.1	Wheat	extracellular	39.93	37.02
TraesCS1B01G222300.1	Wheat	extracellular	36.57	36.98
TraesCS6B01G046300.1	Wheat	extracellular	37.31	36.63
TraesCS6B01G046200.1	Wheat	extracellular	37.31	36.63
TraesCS6B01G046000.1	Wheat	extracellular	37.31	36.63
TraesCS6B01G046400.1	Wheat	extracellular	36.94	36.26
TraesCS6B01G046100.1	Wheat	extracellular	36.94	36.26
TraesCS1B01G225800.1	Wheat	extracellular	36.57	36.16
TraesCS1B01G226000.2	Wheat	extracellular	35.82	35.56
TraesCS2B01G480700.1	Wheat	extracellular	34.7	35.09
TraesCS4B01G362100.1	Wheat	extracellular	34.7	34.44
TraesCS3B01G526800.1	Wheat	extracellular	38.43	34.33
TraesCS4B01G375200.1	Wheat	extracellular	37.31	34.25
TraesCS4B01G362600.1	Wheat	extracellular, unclear	34.33	34.07
TraesCS4B01G362500.1	Wheat	extracellular	34.33	34.07
TraesCS6B01G245700.1	Wheat	extracellular	37.31	33.78
TraesCS1B01G225700.1	Wheat	extracellular	38.06	33.77
TraesCS3B01G524500.1	Wheat	extracellular	38.81	33.44
TraesCS1B01G225900.1	Wheat	extracellular, mitochondrion, plastid	36.57	32.89
TraesCS5B01G376500.1	Wheat	extracellular	37.31	32.36
TraesCS1B01G226100.1	Wheat	extracellular	36.57	31.41
TraesCS5B01G079400.1	Wheat	extracellular, plasma membrane	37.31	29.33
TraesCS4B01G375600.1	Wheat	extracellular	36.94	29.03
TraesCS1B01G217200.1	Wheat	extracellular	27.24	26.55
TraesCS4B01G327200.1	Wheat	extracellular	26.49	26.49
TraesCS4B01G327100.1	Wheat	golgi	26.49	26.2
TraesCS4B01G326900.1	Wheat	extracellular	26.49	25.82
TraesCS7B01G468700.1	Wheat	endoplasmic reticulum, extracellular	28.36	24.05
TraesCS7B01G469200.1	Wheat	endoplasmic reticulum, extracellular	26.12	21.94
TraesCS7B01G469100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	28.36	11.8

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.3	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0019953
InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	InterPro:LolPI	PFAM:PF01357
PFAM:PF03330	PRINTS:PR00829	PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692
PANTHER:PTHR31692:SF5	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685
SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6B01G264400	EnsemblPlants:TraesCS6B01G264400.1	SEG:seg	:

Description

No Description!

Coordinates

chr6B:+:476041231..476044861

Molecular Weight (calculated)

28451.0 Da

IEP (calculated)

8.802

GRAVY (calculated)

0.021

Length

268 amino acids

Sequence
(BLAST)

001: MAAGSAASSS CALLLVSILS AALLFGVGET GAVRKAVDPE WHQATATWYG SAEGDGSDGG ACGYGTLVDV VPMKARVGAV SPVLFKSGEG CGACYKVRCL
101: DRGICSRRAV TVIVTDECPG GYCSLGRTHF DLSGAAFGRL AVAGHAGQLR NRGEISVVFR RTPCKYRGKN IAFRVVEGST SFWLSLLVEF EDGDGDIGSM
201: QLKQTNSAQW QDMKHIWGAT WSLTPGPLVG PFSVRLTTLT TKKTLSAQDV IPRNWTPKAT YTSRLNFA

Best Arabidopsis Sequence Match ( AT4G28250.3 )
(BLAST)

001: MQLFPVMLAT LCIVLQLLIG SSALATTNRH VSNSHWLPAV ATWYGSPNGD GSDGGACGYG TLVDVKPLHA RVGAVNPILF KNGEGCGACY KVRCLDKSIC
101: SRRAVTVIIT DECPGCSKTS THFDLSGAVF GRLAIAGESG PLRNRGLIPV IYRRGKNIAF HVNEGSTDFW LSLLVEFEDG EGDIGSMHIR QVTLFLSLIT
201: KLVHALL

Arabidopsis Description

EXPB3EXPB3 [Source:UniProtKB/TrEMBL;Acc:A0A178USU9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.