Factsheet for GSMUA_AchrUn_randomP06310_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P12080_001	Banana	extracellular	84.41	83.15
GSMUA_Achr1P00120_001	Banana	extracellular	80.99	80.08
VIT_12s0059g00190.t01	Wine grape	extracellular	75.29	76.45
Os02t0639500-01	Rice	extracellular	72.24	72.8
TraesCS6D01G218500.1	Wheat	extracellular	74.14	72.76
TraesCS6A01G235800.1	Wheat	extracellular	73.76	72.66
TraesCS6B01G264400.1	Wheat	extracellular	73.38	72.01
Zm00001d017377_P001	Maize	extracellular	72.24	70.9
HORVU6Hr1G060410.7	Barley	extracellular	72.24	70.9
Solyc07g054170.2.1	Tomato	extracellular	70.72	69.66
PGSC0003DMT400047177	Potato	extracellular	70.72	69.66
KRH26935	Soybean	extracellular	68.82	69.35
EES05488	Sorghum	extracellular	71.86	69.23
CDY58728	Canola	extracellular	69.2	68.68
CDY70556	Canola	extracellular	68.82	68.3
Bra024215.1-P	Field mustard	extracellular	68.82	68.3
TraesCS2D01G369200.2	Wheat	extracellular	72.24	68.1
PGSC0003DMT400055827	Potato	extracellular	67.68	67.94
AT4G28250.1	Thale cress	extracellular	68.06	67.8
Solyc10g008440.2.1	Tomato	extracellular	67.3	67.56
Bra026272.1-P	Field mustard	extracellular	68.06	67.55
KRH25552	Soybean	extracellular	68.44	67.42
TraesCS2A01G373000.1	Wheat	extracellular	71.86	67.26
CDY18990	Canola	extracellular	67.68	67.17
KRH55988	Soybean	extracellular	68.06	67.04
TraesCS2B01G390000.1	Wheat	extracellular	71.1	66.55
KRH22402	Soybean	extracellular	63.5	64.73
CDY05789	Canola	extracellular	63.12	62.64
Bra036499.1-P	Field mustard	extracellular	62.74	62.26
CDY31940	Canola	extracellular	62.74	62.26
AT2G20750.1	Thale cress	extracellular	63.5	61.62
Zm00001d002860_P002	Maize	extracellular	70.34	60.66
GSMUA_Achr2P13750_001	Banana	extracellular	42.97	43.3
GSMUA_Achr2P13730_001	Banana	extracellular	42.97	43.13
GSMUA_AchrUn_...	Banana	extracellular	42.59	42.42
GSMUA_Achr2P13740_001	Banana	extracellular	42.21	42.37
GSMUA_Achr4P26910_001	Banana	extracellular	42.59	41.18
GSMUA_Achr7P07040_001	Banana	extracellular	42.97	40.21
GSMUA_Achr2P11930_001	Banana	extracellular	24.71	39.88
GSMUA_AchrUn_...	Banana	extracellular	27.0	39.44
GSMUA_AchrUn_...	Banana	extracellular	13.69	39.13
Os04t0530100-01	Rice	extracellular, mitochondrion, vacuole	41.44	33.75
GSMUA_AchrUn_...	Banana	extracellular	20.53	28.72
GSMUA_AchrUn_...	Banana	extracellular	26.62	27.56
GSMUA_Achr11P...	Banana	extracellular	26.24	27.17
GSMUA_Achr5P11590_001	Banana	extracellular	26.24	26.44
GSMUA_Achr11P...	Banana	extracellular	25.86	25.56
GSMUA_Achr5P19030_001	Banana	extracellular	25.1	25.0
GSMUA_Achr11P...	Banana	extracellular	25.1	24.91
GSMUA_Achr1P02170_001	Banana	extracellular, peroxisome, plastid	27.76	23.78
GSMUA_Achr5P12710_001	Banana	extracellular, nucleus, plasma membrane	23.57	19.44

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.3	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0019953
EnsemblPlantsGene:GSMUA_AchrUn_randomG06310_001	EnsemblPlants:GSMUA_AchrUn_randomP06310_001	EnsemblPlants:GSMUA_AchrUn_randomT06310_001	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	InterPro:LolPI	UniProt:M0U6U2	PFAM:PF01357	PFAM:PF03330	PRINTS:PR00829
PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692	PANTHER:PTHR31692:SF5	InterPro:RlpA-like_DPBB
InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI000296F5AC	SEG:seg	:	:	:	:

Description

Expansin-B17 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG06310_001]

Coordinates

chrchrUn_random:-:26036370..26039006

Molecular Weight (calculated)

28464.9 Da

IEP (calculated)

7.354

GRAVY (calculated)

0.059

Length

263 amino acids

Sequence
(BLAST)

001: MTSSSSSSCG FFLFLFCFLF FFFDAGEAFA VFDPHWHPAT ATWYGSAEGD GSDGGACGYG TLVDVKPLRA RVGAVSPVLF KGGEGCGACY KVRCLDPAIC
101: SRRAVTVIVT DECPGGYCAS GHTHFDLSGA AFGRMAVAGE AGQLRDRGEI SVIFCRTPCK YPGKNIAFHV NEGSTNFWLS LLVEFEGDDG DIGSMHIKQA
201: NSMKWLEMKH VWGASWCIIG GPLQGPFSVK LTTLTTQRTL SARDVIPRNW SPKATYTSRL NFL

Best Arabidopsis Sequence Match ( AT4G28250.1 )
(BLAST)

001: MQLFPVMLAT LCIVLQLLIG SSALATTNRH VSNSHWLPAV ATWYGSPNGD GSDGGACGYG TLVDVKPLHA RVGAVNPILF KNGEGCGACY KVRCLDKSIC
101: SRRAVTVIIT DECPGCSKTS THFDLSGAVF GRLAIAGESG PLRNRGLIPV IYRRTACKYR GKNIAFHVNE GSTDFWLSLL VEFEDGEGDI GSMHIRQAGA
201: REWLEMKHVW GANWCIIGGP LKGPFSIKLT TLSAGKTLSA TDVVPRNWAP KATYSSRLNF SPVL

Arabidopsis Description

EXPB3EXPB3 [Source:UniProtKB/TrEMBL;Acc:A0A178USU9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.