Factsheet for Os04t0530100-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, vacuole

Predictor Summary:

plastid 2
extracellular 3
mitochondrion 2
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0639500-01	Rice	extracellular	35.6	44.06
VIT_12s0059g00190.t01	Wine grape	extracellular	34.67	43.24
GSMUA_Achr5P12080_001	Banana	extracellular	35.29	42.7
GSMUA_AchrUn_...	Banana	extracellular	33.75	41.44
GSMUA_Achr1P00120_001	Banana	extracellular	33.75	40.98
KRH26935	Soybean	extracellular	32.82	40.61
KRH55988	Soybean	extracellular	33.13	40.07
KRH25552	Soybean	extracellular	33.13	40.07
Solyc07g054170.2.1	Tomato	extracellular	32.82	39.7
PGSC0003DMT400047177	Potato	extracellular	32.82	39.7
CDY05789	Canola	extracellular	31.58	38.49
Bra026272.1-P	Field mustard	extracellular	31.27	38.11
Bra036499.1-P	Field mustard	extracellular	31.27	38.11
CDY18990	Canola	extracellular	31.27	38.11
CDY31940	Canola	extracellular	31.27	38.11
AT4G28250.1	Thale cress	extracellular	30.96	37.88
CDY70556	Canola	extracellular	30.96	37.74
Bra024215.1-P	Field mustard	extracellular	30.96	37.74
CDY58728	Canola	extracellular	30.96	37.74
AT2G20750.1	Thale cress	extracellular	31.58	37.64
KRH22402	Soybean	extracellular	30.03	37.6
Solyc10g008440.2.1	Tomato	extracellular	29.72	36.64
PGSC0003DMT400055827	Potato	extracellular	29.1	35.88
Os05t0246300-01	Rice	extracellular	23.53	28.79
Os02t0658600-00	Rice	plastid	23.84	28.21
Os04t0552000-00	Rice	extracellular	22.6	27.65
Os04t0552200-00	Rice	plasma membrane	23.22	27.27
Os10t0555700-02	Rice	extracellular	20.74	25.67
Os02t0658800-01	Rice	extracellular	22.91	25.34
Os10t0548600-01	Rice	plasma membrane	20.12	24.16
Os10t0555600-01	Rice	extracellular	20.12	23.64
Os03t0102700-01	Rice	plastid	20.12	23.3
Os03t0106700-00	Rice	extracellular	16.41	23.25
Os03t0106900-00	Rice	extracellular	19.2	23.22
Os03t0106500-01	Rice	plasma membrane	19.2	23.22
Os10t0555900-02	Rice	extracellular	19.2	23.13
Os03t0106800-01	Rice	plasma membrane	18.89	22.85
Os03t0645000-00	Rice	mitochondrion	21.98	22.68
Os03t0102500-01	Rice	extracellular	19.2	22.46
Os10t0556100-01	Rice	extracellular	19.81	22.38
Os10t0542400-01	Rice	extracellular	16.41	19.27
Os07t0496250-01	Rice	extracellular	15.17	19.14
Os03t0132200-01	Rice	extracellular, plastid	14.24	16.49
Os07t0475400-01	Rice	extracellular	13.0	15.22
Os06t0725300-01	Rice	endoplasmic reticulum	14.55	15.02

Protein Annotations

EnsemblPlants:Os04t0530100-01	EnsemblPlantsGene:Os04g0530100	Gene3D:2.40.40.10	GO:GO:0005575	GO:GO:0005576	InterPro:Expan_Lol_pI
InterPro:Expansin/allergen_DPBB_dom	InterPro:IPR007112	InterPro:IPR036908	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	PANTHER:PTHR31692
PANTHER:PTHR31692:SF48	PFAM:PF03330	PFscan:PS50842	PRINTS:PR01225	ProteinID:BAS90204.1	SEG:seg
SMART:SM00837	SUPFAM:SSF50685	UniParc:UPI000393B4D9	UniProt:A0A0P0WD42	MapMan:35.1	:

Description

BETA-EXPANSIN 17Similar to Beta-expansin 1 precursor (AtEXPB1) (At-EXPB1) (Ath-ExpBeta-1.5). (Os04t0530100-01)

Coordinates

chr4:+:26518761..26522048

Molecular Weight (calculated)

34155.0 Da

IEP (calculated)

8.684

GRAVY (calculated)

-0.059

Length

323 amino acids

Sequence
(BLAST)

001: LRPNSWRPSS SCTLQSSIVQ FGIAIGDNFF VGFNQSKTFF LSYFSGGACG YGSLVDVVPM KARVGSVSPV LFKDGEGCGA CYKVKCLDHG ICSRRAVTVI
101: VTDECPGGLC AFGRTHFDLS GAAFSRMAVA GAGGHLRDRG QLSVVYRSVQ IYQDCVQVRR EEHSLPCKRG LDELLAVTAG RVRGRPGRHW IHADKAGELS
201: GVAGHEACVG GHVVPRAGPA CRALLGEVDD AVGPEGAHGP GRHPQELEAH GHLHLAPQLR GRPLIGWGSA GPGPTFYRPG KLPGGPAKAG PTWQSVRQES
301: QASSIVMQLI ILVGLIIHDS IHG

Best Arabidopsis Sequence Match ( AT4G28250.4 )
(BLAST)

001: MQLFPVMLAT LCIVLQLLIG SSALATTNRH VSNSHWLPAV ATWYGSPNGD GSDGGACGYG TLVDVKPLHA RVGAVNPILF KNGEGCGACY KVRCLDKSIC
101: SRRAVTVIIT DECPGCSKTS THFDLSGAVF GRLAIAGESG PLRNRGLIPV IYRRGKNIAF HVNEGSTDFW LSLLVEFEDG EGDIGSMHIR QKKEETNLSG
201: VSTCMDLLLT S

Arabidopsis Description

EXPB3EXPB3 [Source:UniProtKB/TrEMBL;Acc:A0A178USU9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.