Factsheet for GSMUA_Achr5P12080_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	extracellular	83.15	84.41
GSMUA_Achr1P00120_001	Banana	extracellular	82.02	82.33
VIT_12s0059g00190.t01	Wine grape	extracellular	71.16	73.36
Os02t0639500-01	Rice	extracellular	70.04	71.65
TraesCS6D01G218500.1	Wheat	extracellular	70.41	70.15
TraesCS6A01G235800.1	Wheat	extracellular	69.66	69.66
TraesCS6B01G264400.1	Wheat	extracellular	69.29	69.03
Solyc07g054170.2.1	Tomato	extracellular	68.54	68.54
Zm00001d017377_P001	Maize	extracellular	68.54	68.28
HORVU6Hr1G060410.7	Barley	extracellular	68.54	68.28
KRH26935	Soybean	extracellular	65.92	67.43
PGSC0003DMT400047177	Potato	extracellular	67.42	67.42
EES05488	Sorghum	extracellular	67.42	65.93
Solyc10g008440.2.1	Tomato	extracellular	63.67	64.89
AT4G28250.1	Thale cress	extracellular	64.04	64.77
Bra026272.1-P	Field mustard	extracellular	64.04	64.53
PGSC0003DMT400055827	Potato	extracellular	63.3	64.5
CDY18990	Canola	extracellular	63.67	64.15
Bra024215.1-P	Field mustard	extracellular	62.92	63.4
CDY70556	Canola	extracellular	62.92	63.4
KRH55988	Soybean	extracellular	63.3	63.3
KRH22402	Soybean	extracellular	61.05	63.18
TraesCS2D01G369200.2	Wheat	extracellular	65.92	63.08
CDY58728	Canola	extracellular	62.55	63.02
KRH25552	Soybean	extracellular	62.92	62.92
CDY05789	Canola	extracellular	62.17	62.64
TraesCS2A01G373000.1	Wheat	extracellular	65.92	62.63
TraesCS2B01G390000.1	Wheat	extracellular	65.17	61.92
Bra036499.1-P	Field mustard	extracellular	61.42	61.89
CDY31940	Canola	extracellular	61.42	61.89
AT2G20750.1	Thale cress	extracellular	62.17	61.25
Zm00001d002860_P002	Maize	extracellular	66.67	58.36
GSMUA_AchrUn_...	Banana	extracellular	42.32	42.8
GSMUA_Achr2P13750_001	Banana	extracellular	41.57	42.53
GSMUA_Achr2P13730_001	Banana	extracellular	41.2	41.98
GSMUA_Achr4P26910_001	Banana	extracellular	42.7	41.91
GSMUA_Achr2P13740_001	Banana	extracellular	40.82	41.6
GSMUA_Achr7P07040_001	Banana	extracellular	42.32	40.21
GSMUA_Achr2P11930_001	Banana	extracellular	24.34	39.88
GSMUA_AchrUn_...	Banana	extracellular	13.11	38.04
GSMUA_AchrUn_...	Banana	extracellular	25.09	37.22
Os04t0530100-01	Rice	extracellular, mitochondrion, vacuole	42.7	35.29
GSMUA_AchrUn_...	Banana	extracellular	27.34	28.74
GSMUA_AchrUn_...	Banana	extracellular	19.48	27.66
GSMUA_Achr11P...	Banana	extracellular	25.47	26.77
GSMUA_Achr5P11590_001	Banana	extracellular	24.72	25.29
GSMUA_Achr11P...	Banana	extracellular	24.72	24.81
GSMUA_Achr5P19030_001	Banana	extracellular	23.6	23.86
GSMUA_Achr11P...	Banana	extracellular	23.22	23.4
GSMUA_Achr1P02170_001	Banana	extracellular, peroxisome, plastid	26.22	22.8
GSMUA_Achr5P12710_001	Banana	extracellular, nucleus, plasma membrane	23.22	19.44

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.3	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0019953	EnsemblPlantsGene:GSMUA_Achr5G12080_001	EnsemblPlants:GSMUA_Achr5P12080_001	EnsemblPlants:GSMUA_Achr5T12080_001	InterPro:IPR007112
InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	InterPro:LolPI	UniProt:M0SXT7	PFAM:PF01357
PFAM:PF03330	PRINTS:PR00829	PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692
PANTHER:PTHR31692:SF5	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685
TMHMM:TMhelix	UniParc:UPI0002956B36	SEG:seg	:	:	:

Description

Expansin-B17 [Source:GMGC_GENE;Acc:GSMUA_Achr5G12080_001]

Coordinates

chr5:+:8742324..8744548

Molecular Weight (calculated)

29250.5 Da

IEP (calculated)

6.605

GRAVY (calculated)

-0.027

Length

267 amino acids

Sequence
(BLAST)

001: MASSFFSPFS SCVLLILFFF SFFVFWFDYG DSHPVFDPHW HPATATWYGS PDGDGSDGGA CGYGSLVDVR PLRARVGAVS PVLFKGGQGC GACYKVRCLD
101: PAICSRRAVT VIVTDECPGG YCASGRTHFD LSGAAFGRMA VAGEAGQIRD RGEISVVFRR TPCKYPGKNI AFHVNEGSTN YWISLLVEFE DDDGDIGAMH
201: IKQANSVEWL EMKHIWGGNW CFNGGPLQGP FSVKLTTLTT QKTFSARDVI PSNWSPDVTY TSRLNFL

Best Arabidopsis Sequence Match ( AT4G28250.1 )
(BLAST)

001: MQLFPVMLAT LCIVLQLLIG SSALATTNRH VSNSHWLPAV ATWYGSPNGD GSDGGACGYG TLVDVKPLHA RVGAVNPILF KNGEGCGACY KVRCLDKSIC
101: SRRAVTVIIT DECPGCSKTS THFDLSGAVF GRLAIAGESG PLRNRGLIPV IYRRTACKYR GKNIAFHVNE GSTDFWLSLL VEFEDGEGDI GSMHIRQAGA
201: REWLEMKHVW GANWCIIGGP LKGPFSIKLT TLSAGKTLSA TDVVPRNWAP KATYSSRLNF SPVL

Arabidopsis Description

EXPB3EXPB3 [Source:UniProtKB/TrEMBL;Acc:A0A178USU9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.