Factsheet for GSMUA_Achr5P12710_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus, plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	extracellular
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	extracellular	58.62	73.62
VIT_02s0012g00830.t01	Wine grape	extracellular	46.71	58.43
GSMUA_Achr11P...	Banana	extracellular	46.4	58.27
Os07t0496250-01	Rice	extracellular	46.4	57.81
KRH77254	Soybean	extracellular	46.08	57.65
KRH76358	Soybean	extracellular, plasma membrane, vacuole	39.19	57.34
KRH28238	Soybean	extracellular	45.45	56.86
KRH57566	Soybean	extracellular	43.89	56.0
KRH04284	Soybean	extracellular	43.57	55.38
PGSC0003DMT400052810	Potato	extracellular	43.89	55.34
PGSC0003DMT400004660	Potato	extracellular	44.2	55.29
Solyc08g077330.2.1	Tomato	extracellular	43.26	54.12
OQU89980	Sorghum	extracellular, plasma membrane, vacuole	30.41	43.11
GSMUA_AchrUn_...	Banana	extracellular	18.5	31.38
GSMUA_AchrUn_...	Banana	extracellular	24.45	29.55
GSMUA_Achr2P13740_001	Banana	extracellular	23.51	28.63
GSMUA_Achr11P...	Banana	extracellular	23.82	28.57
GSMUA_Achr5P11590_001	Banana	extracellular	22.57	27.59
GSMUA_Achr11P...	Banana	extracellular	22.88	27.55
GSMUA_Achr5P19030_001	Banana	extracellular	22.57	27.27
GSMUA_AchrUn_...	Banana	extracellular	15.36	27.22
GSMUA_Achr2P13730_001	Banana	extracellular	22.26	27.1
GSMUA_Achr4P26910_001	Banana	extracellular	22.57	26.47
GSMUA_Achr2P13750_001	Banana	extracellular	21.63	26.44
GSMUA_Achr2P11930_001	Banana	extracellular	13.48	26.38
GSMUA_Achr7P07040_001	Banana	extracellular	22.26	25.27
GSMUA_Achr1P02170_001	Banana	extracellular, peroxisome, plastid	24.14	25.08
GSMUA_AchrUn_...	Banana	extracellular	6.9	23.91
GSMUA_AchrUn_...	Banana	extracellular	19.44	23.57
GSMUA_Achr1P00120_001	Banana	extracellular	19.44	23.31
GSMUA_Achr5P12080_001	Banana	extracellular	19.44	23.22

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:35.1	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	EnsemblPlantsGene:GSMUA_Achr5G12710_001	EnsemblPlants:GSMUA_Achr5P12710_001	EnsemblPlants:GSMUA_Achr5T12710_001
InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	UniProt:M0SY00	PFAM:PF01357
PFAM:PF03330	PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692	PANTHER:PTHR31692:SF2
InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SUPFAM:SSF49590	SUPFAM:SSF50685	UniParc:UPI000296FA9C	SEG:seg

Description

Expansin-like B1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G12710_001]

Coordinates

chr5:+:9111161..9113159

Molecular Weight (calculated)

34799.6 Da

IEP (calculated)

6.691

GRAVY (calculated)

-0.048

Length

319 amino acids

Sequence
(BLAST)

001: MLILICLASQ HRSQDTETGG VFPGMTFKMC FLLPAPSLQL NLHSLTIVLN NLFPYLLPLL LLQWLCPLNC SSSYLYFSNI PPEQRHAAIA SPNPGQLTTQ
101: ILIKQEQRGR SKHLHETSGS FGATLNDGDV LASSSLYRNG VGCGACYQVR CTDAKYCSND GVMIIITDAG VSGNIEFILS QHAFARMGQN ADLGASLLSL
201: GAVGIEYRRV SCSYPSKNIT FKIDQSSNHP SYFAFQIWDQ QGNKDVTAVQ LCETENLTCK LLERSHGAVR AVVSPPSGPL SVRILQSGGD DRDETWVVPP
301: NNIPQNWTSG AIYDSGIQV

Best Arabidopsis Sequence Match ( AT4G17030.1 )
(BLAST)

001: MKHSHVLLLL FVQVIVLLPL LCLSDDFVNS RATYYGSPDC KANPRGHCGY GEFGRDINNG EVSGVSWRLW NNGTGCGACY QVRCKIPPHC SEEGVYVVAT
101: DSGEGDGTDF ILSPKAYGRM ARPGTENQLY SFGVVNVEYQ RIPCRYAGYN LVYKIHEKSY NPHYLAILVL YVGGVNDILA VEVWQEDCKE WRRMRRVFGA
201: VHDLQNPPRG TLTLRFLVYG SAGINWIQSP NAIPADWTAG ATYDSNILLT

Arabidopsis Description

EXLB1Expansin-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WRS3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.