Factsheet for VIT_02s0012g00830.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77254	Soybean	extracellular	76.08	76.08
PGSC0003DMT400004660	Potato	extracellular	74.12	74.12
Solyc08g077330.2.1	Tomato	extracellular	74.12	74.12
KRH28238	Soybean	extracellular	73.33	73.33
KRH04284	Soybean	extracellular	70.59	71.71
PGSC0003DMT400052810	Potato	extracellular	70.59	71.15
KRH76358	Soybean	extracellular, plasma membrane, vacuole	60.78	71.1
KRH57566	Soybean	extracellular	69.41	70.8
GSMUA_AchrUn_...	Banana	extracellular	69.8	70.08
Os07t0496250-01	Rice	extracellular	61.96	61.72
GSMUA_Achr11P...	Banana	extracellular	60.39	60.63
VIT_00s0309g00050.t01	Wine grape	extracellular	47.06	47.81
VIT_00s0309g00090.t01	Wine grape	extracellular	47.06	47.81
VIT_00s1455g00010.t01	Wine grape	extracellular	46.27	47.01
GSMUA_Achr5P12710_001	Banana	extracellular, nucleus, plasma membrane	58.43	46.71
OQU89980	Sorghum	extracellular, plasma membrane, vacuole	40.39	45.78
VIT_03s0038g03430.t01	Wine grape	extracellular	37.65	37.07
VIT_15s0021g02670.t01	Wine grape	extracellular	32.94	30.77
VIT_15s0021g02700.t01	Wine grape	extracellular	32.55	30.4
VIT_12s0059g00190.t01	Wine grape	extracellular	27.06	26.64
VIT_09s0002g08510.t01	Wine grape	extracellular	28.63	26.16

Protein Annotations

EntrezGene:100262694	wikigene:100262694	Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.4	ProteinID:CCB57929
ProteinID:CCB57929.1	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	UniProt:F6HTB9
EMBL:FN596247	GO:GO:0005575	GO:GO:0005576	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	EntrezGene:LOC100262694	wikigene:LOC100262694	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692	PANTHER:PTHR31692:SF2	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf
SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI00015C90E8	ArrayExpress:VIT_02s0012g00830	EnsemblPlantsGene:VIT_02s0012g00830
EnsemblPlants:VIT_02s0012g00830.t01	unigene:Vvi.3740	RefSeq:XP_002278917	RefSeq:XP_002278917.1	:	:

Description

No Description!

Coordinates

chr2:+:6705360..6707816

Molecular Weight (calculated)

27914.7 Da

IEP (calculated)

4.421

GRAVY (calculated)

-0.114

Length

255 amino acids

Sequence
(BLAST)

001: MALPPHSLLL VFASFFLMQS LAYAATCSDC FTHSRAAYYP NSDELGTETG QCGYGSFGAT INDGDVSAAS DLYRDGVGCG ACYQVRCTNS NYCSDKGVTV
101: VITDHGSGDR TDFIMSKRAF GRMAQTTDAA ASLLALGVVD IEYRRVSCSY PSKNITIKID ENSNFPYYMA FVIWYQQGMK DITAVQLCET QNFVCKLLDR
201: SYGSVWTTNS PPSGTLSLRM LFSGDDGDET WVVPINNIPE NWKAADIYDT GVQVN

Best Arabidopsis Sequence Match ( AT4G17030.1 )
(BLAST)

001: MKHSHVLLLL FVQVIVLLPL LCLSDDFVNS RATYYGSPDC KANPRGHCGY GEFGRDINNG EVSGVSWRLW NNGTGCGACY QVRCKIPPHC SEEGVYVVAT
101: DSGEGDGTDF ILSPKAYGRM ARPGTENQLY SFGVVNVEYQ RIPCRYAGYN LVYKIHEKSY NPHYLAILVL YVGGVNDILA VEVWQEDCKE WRRMRRVFGA
201: VHDLQNPPRG TLTLRFLVYG SAGINWIQSP NAIPADWTAG ATYDSNILLT

Arabidopsis Description

EXLB1Expansin-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WRS3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.