Factsheet for VIT_00s1455g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0309g00050.t01	Wine grape	extracellular	91.24	91.24
VIT_00s0309g00090.t01	Wine grape	extracellular	90.44	90.44
KRH57515	Soybean	extracellular	61.75	61.75
Solyc08g077900.2.1	Tomato	extracellular	62.15	61.66
KRH04222	Soybean	extracellular	61.35	61.35
PGSC0003DMT400067456	Potato	extracellular	61.35	60.87
KRH77296	Soybean	extracellular	58.96	58.96
KRH28194	Soybean	extracellular	58.17	58.17
AT4G17030.1	Thale cress	extracellular	54.58	54.8
Bra012687.1-P	Field mustard	extracellular	54.58	54.8
CDY09659	Canola	plasma membrane	54.58	54.8
Bra012684.1-P	Field mustard	extracellular	54.18	54.4
CDY65447	Canola	extracellular	54.18	54.4
Bra040107.1-P	Field mustard	extracellular	53.39	53.6
CDY42954	Canola	extracellular	52.99	53.2
CDY35606	Canola	extracellular	52.99	53.2
KRH04218	Soybean	extracellular	51.79	52.0
KRH04215	Soybean	nucleus	51.79	52.0
KRH04221	Soybean	extracellular	50.6	51.42
KRH57508	Soybean	endoplasmic reticulum	49.8	51.23
CDX90493	Canola	cytosol, extracellular, nucleus	26.69	51.15
KRH57512	Soybean	extracellular	50.2	51.01
KRH04220	Soybean	endoplasmic reticulum	50.2	50.81
PGSC0003DMT400068379	Potato	mitochondrion	44.22	49.33
Solyc06g060970.1.1	Tomato	extracellular	48.61	49.19
PGSC0003DMT400067458	Potato	extracellular	49.0	49.0
Solyc08g077910.2.1	Tomato	extracellular	46.61	46.61
VIT_02s0012g00830.t01	Wine grape	extracellular	47.01	46.27
PGSC0003DMT400067459	Potato	extracellular	46.22	46.22
VIT_03s0038g03430.t01	Wine grape	extracellular	35.86	34.75
VIT_12s0059g00190.t01	Wine grape	extracellular	31.87	30.89
VIT_15s0021g02670.t01	Wine grape	extracellular	32.67	30.04
VIT_09s0002g08510.t01	Wine grape	extracellular	32.67	29.39
VIT_15s0021g02700.t01	Wine grape	extracellular	31.08	28.57

Protein Annotations

EntrezGene:100243043	wikigene:100243043	EntrezGene:100852449	wikigene:100852449	Gene3D:2.40.40.10	Gene3D:2.60.40.760
MapMan:21.4.2.4	ProteinID:CBI38517	ProteinID:CBI38517.3	ProteinID:CCB54361	ProteinID:CCB54361.1	UniProt:D7U6Z9
InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	EMBL:FN595857	EMBL:FN596605
GO:GO:0005575	GO:GO:0005576	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908
EntrezGene:LOC100243043	wikigene:LOC100243043	EntrezGene:LOC100852449	wikigene:LOC100852449	PFAM:PF01357	PFAM:PF03330
PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692	PANTHER:PTHR31692:SF10	InterPro:RlpA-like_DPBB
InterPro:RlpA-like_sf	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	TIGR:TC55770	UniParc:UPI0001985EFB
ArrayExpress:VIT_00s1455g00010	EnsemblPlantsGene:VIT_00s1455g00010	EnsemblPlants:VIT_00s1455g00010.t01	RefSeq:XP_002273896	RefSeq:XP_002273896.1	:

Description

No Description!

Coordinates

chrUn:+:39210439..39212051

Molecular Weight (calculated)

27757.3 Da

IEP (calculated)

7.199

GRAVY (calculated)

-0.050

Length

251 amino acids

Sequence
(BLAST)

001: MGFALSHYCC FLCFIVLLPL LCKCEDTFTY SRATYYGSPD CLGTPTGACG FGEYGRSVNG GNVGAVSRLY RNGTGCGACY QVRCKVPNLC ADNGMKVVVT
101: DHGEGDYTDF ILSPRGFSML ARPNMAADLF AYGVVGIEYR RVPCQYPGSN IFFKVHEHSR FPDYLAIVML YQAGLSDITA VDIWQEDCQE WKGMRKSYGA
201: VWDMANPPKG PVGLRFQVSG RGGQKWVQLM NVIPSDWKAG VAYDSAFQLD Y

Best Arabidopsis Sequence Match ( AT4G17030.1 )
(BLAST)

001: MKHSHVLLLL FVQVIVLLPL LCLSDDFVNS RATYYGSPDC KANPRGHCGY GEFGRDINNG EVSGVSWRLW NNGTGCGACY QVRCKIPPHC SEEGVYVVAT
101: DSGEGDGTDF ILSPKAYGRM ARPGTENQLY SFGVVNVEYQ RIPCRYAGYN LVYKIHEKSY NPHYLAILVL YVGGVNDILA VEVWQEDCKE WRRMRRVFGA
201: VHDLQNPPRG TLTLRFLVYG SAGINWIQSP NAIPADWTAG ATYDSNILLT

Arabidopsis Description

EXLB1Expansin-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WRS3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.