Factsheet for VIT_00s0309g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0309g00090.t01	Wine grape	extracellular	96.02	96.02
VIT_00s1455g00010.t01	Wine grape	extracellular	91.24	91.24
KRH57515	Soybean	extracellular	58.96	58.96
KRH04222	Soybean	extracellular	58.57	58.57
Solyc08g077900.2.1	Tomato	extracellular	58.57	58.1
PGSC0003DMT400067456	Potato	extracellular	57.77	57.31
KRH77296	Soybean	extracellular	55.38	55.38
KRH28194	Soybean	extracellular	54.98	54.98
Bra012684.1-P	Field mustard	extracellular	52.19	52.4
Bra012687.1-P	Field mustard	extracellular	52.19	52.4
CDY09659	Canola	plasma membrane	52.19	52.4
CDY65447	Canola	extracellular	52.19	52.4
AT4G17030.1	Thale cress	extracellular	51.79	52.0
KRH04215	Soybean	nucleus	51.79	52.0
KRH04218	Soybean	extracellular	51.79	52.0
KRH57512	Soybean	extracellular	50.6	51.42
KRH04221	Soybean	extracellular	50.6	51.42
Bra040107.1-P	Field mustard	extracellular	51.0	51.2
CDY42954	Canola	extracellular	50.6	50.8
CDY35606	Canola	extracellular	50.6	50.8
KRH57508	Soybean	endoplasmic reticulum	49.0	50.41
KRH04220	Soybean	endoplasmic reticulum	49.8	50.4
CDX90493	Canola	cytosol, extracellular, nucleus	26.29	50.38
PGSC0003DMT400067458	Potato	extracellular	48.61	48.61
Solyc06g060970.1.1	Tomato	extracellular	47.01	47.58
VIT_02s0012g00830.t01	Wine grape	extracellular	47.81	47.06
PGSC0003DMT400068379	Potato	mitochondrion	41.83	46.67
PGSC0003DMT400067459	Potato	extracellular	45.82	45.82
Solyc08g077910.2.1	Tomato	extracellular	45.42	45.42
VIT_03s0038g03430.t01	Wine grape	extracellular	35.86	34.75
VIT_12s0059g00190.t01	Wine grape	extracellular	32.67	31.66
VIT_15s0021g02670.t01	Wine grape	extracellular	33.86	31.14
VIT_15s0021g02700.t01	Wine grape	extracellular	32.27	29.67
VIT_09s0002g08510.t01	Wine grape	extracellular	32.27	29.03

Protein Annotations

EntrezGene:100267839	wikigene:100267839	Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.4	ProteinID:CBI29507
ProteinID:CBI29507.3	UniProt:D7TG84	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf
EMBL:FN595791	GO:GO:0005575	GO:GO:0005576	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	EntrezGene:LOC100267839	wikigene:LOC100267839	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692	PANTHER:PTHR31692:SF10	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf
SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI0001BE300C	ArrayExpress:VIT_00s0309g00050	EnsemblPlantsGene:VIT_00s0309g00050
EnsemblPlants:VIT_00s0309g00050.t01	unigene:Vvi.25006	RefSeq:XP_002269095	RefSeq:XP_002269095.2	RefSeq:XP_002270175	RefSeq:XP_002270175.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:22613261..22614876

Molecular Weight (calculated)

27688.2 Da

IEP (calculated)

8.027

GRAVY (calculated)

-0.123

Length

251 amino acids

Sequence
(BLAST)

001: MGFPLSHYCC FLCVIVLLPV LCKCEDAFTY SRATYYGTPD GLGTPTGACG FGEYGRSVNG GNVGAVSRLY RDGTGCGACY QVRCKMPNLC ADVGMKVVVT
101: DHGGGDDTDF ILSRRGFSML ARPNKAADLF AYGVVGIEYR RVPCQYPGSN IFFKVHENSR FPDYLALVML YQAGLSDITA VDIWQEDSQA WKGMRKSHGA
201: VWDMPNPPKG PVSLRFQVSG RRGQKWVQLM NVIPSDWKAG VAYDSNFQLD Y

Best Arabidopsis Sequence Match ( AT4G17030.1 )
(BLAST)

001: MKHSHVLLLL FVQVIVLLPL LCLSDDFVNS RATYYGSPDC KANPRGHCGY GEFGRDINNG EVSGVSWRLW NNGTGCGACY QVRCKIPPHC SEEGVYVVAT
101: DSGEGDGTDF ILSPKAYGRM ARPGTENQLY SFGVVNVEYQ RIPCRYAGYN LVYKIHEKSY NPHYLAILVL YVGGVNDILA VEVWQEDCKE WRRMRRVFGA
201: VHDLQNPPRG TLTLRFLVYG SAGINWIQSP NAIPADWTAG ATYDSNILLT

Arabidopsis Description

EXLB1Expansin-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WRS3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.