Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 9
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400067456 | Potato | extracellular | 97.63 | 97.63 |
| VIT_00s1455g00010.t01 | Wine grape | extracellular | 61.66 | 62.15 |
| VIT_00s0309g00050.t01 | Wine grape | extracellular | 58.1 | 58.57 |
| VIT_00s0309g00090.t01 | Wine grape | extracellular | 56.92 | 57.37 |
| KRH04222 | Soybean | extracellular | 52.96 | 53.39 |
| Bra012687.1-P | Field mustard | extracellular | 52.57 | 53.2 |
| Solyc06g060970.1.1 | Tomato | extracellular | 51.78 | 52.82 |
| CDY42954 | Canola | extracellular | 52.17 | 52.8 |
| KRH57515 | Soybean | extracellular | 52.17 | 52.59 |
| KRH28194 | Soybean | extracellular | 52.17 | 52.59 |
| AT4G17030.1 | Thale cress | extracellular | 51.78 | 52.4 |
| Bra040107.1-P | Field mustard | extracellular | 51.78 | 52.4 |
| KRH77296 | Soybean | extracellular | 51.78 | 52.19 |
| CDY65447 | Canola | extracellular | 51.38 | 52.0 |
| CDY35606 | Canola | extracellular | 51.38 | 52.0 |
| Bra012684.1-P | Field mustard | extracellular | 51.38 | 52.0 |
| CDY09659 | Canola | plasma membrane | 51.38 | 52.0 |
| CDX90493 | Canola | cytosol, extracellular, nucleus | 26.09 | 50.38 |
| Solyc08g077910.2.1 | Tomato | extracellular | 45.85 | 46.22 |
| KRH04221 | Soybean | extracellular | 43.87 | 44.94 |
| KRH57512 | Soybean | extracellular | 43.48 | 44.53 |
| KRH57508 | Soybean | endoplasmic reticulum | 42.29 | 43.85 |
| KRH04218 | Soybean | extracellular | 41.9 | 42.4 |
| KRH04215 | Soybean | nucleus | 41.9 | 42.4 |
| KRH04220 | Soybean | endoplasmic reticulum | 41.5 | 42.34 |
| Solyc08g077330.2.1 | Tomato | extracellular | 41.9 | 41.57 |
| Solyc01g112000.2.1 | Tomato | extracellular | 36.36 | 35.25 |
| Solyc10g008440.2.1 | Tomato | extracellular | 28.46 | 27.48 |
| Solyc01g090810.2.1 | Tomato | extracellular | 29.25 | 26.91 |
| Solyc05g052330.1.1 | Tomato | extracellular | 28.06 | 26.49 |
| Solyc01g090820.1.1 | Tomato | extracellular | 26.88 | 26.46 |
| Solyc03g093390.2.1 | Tomato | extracellular, nucleus | 29.64 | 26.32 |
| Solyc07g054170.2.1 | Tomato | extracellular | 27.67 | 26.22 |
| Solyc10g018500.1.1 | Tomato | extracellular | 27.27 | 26.04 |
| Solyc07g049540.1.1 | Tomato | extracellular | 25.3 | 24.9 |
Protein Annotations
| Gene3D:2.40.40.10 | Gene3D:2.60.40.760 | MapMan:21.4.2.4 | InterPro:Expan_Lol_pI | InterPro:Expansin/allergen_DPBB_dom | InterPro:Expansin_CBD |
| InterPro:Expansin_CBD_sf | GO:GO:0005575 | GO:GO:0005576 | InterPro:IPR007112 | InterPro:IPR007117 | InterPro:IPR036749 |
| InterPro:IPR036908 | UniProt:K4CNE9 | PFAM:PF01357 | PFAM:PF03330 | PRINTS:PR01225 | PFscan:PS50842 |
| PFscan:PS50843 | PANTHER:PTHR31692 | PANTHER:PTHR31692:SF10 | InterPro:RlpA-like_DPBB | InterPro:RlpA-like_sf | SUPFAM:SSF49590 |
| SUPFAM:SSF50685 | SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc08g077900.2 | EnsemblPlants:Solyc08g077900.2.1 | TMHMM:TMhelix | UniParc:UPI000276C8A3 |
Description
Expansin-like B1 [Source:Projected from Arabidopsis thaliana (AT4G17030) UniProtKB/Swiss-Prot;Acc:O23547]
Coordinates
chr8:+:61805319..61808521
Molecular Weight (calculated)
28235.6 Da
IEP (calculated)
6.602
GRAVY (calculated)
-0.125
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFNNSHCII FLLVTIIIYP SICYGQEANS LYSRATYYGS PDCYGTPSGA CGFGEYGRKI YDGKVSGVSR LYRNGTGCGA CYQVRCKVPG HCTDEGTKIV
101: VTDHGEGDHT DFILSVRAYS DMATSGMANH LLAYGVVDVE YRRVPCTYYG YNLMIKVHEH SRFCNYLAIV PIYQSGAFDI EAVEVWQADC KEWKGMRKAY
201: GAVWDMPNPP KGSLTFRVQV SVNGEATKWV QLADVLPDQW KAGIAYDTYL MLD
101: VTDHGEGDHT DFILSVRAYS DMATSGMANH LLAYGVVDVE YRRVPCTYYG YNLMIKVHEH SRFCNYLAIV PIYQSGAFDI EAVEVWQADC KEWKGMRKAY
201: GAVWDMPNPP KGSLTFRVQV SVNGEATKWV QLADVLPDQW KAGIAYDTYL MLD
001: MKHSHVLLLL FVQVIVLLPL LCLSDDFVNS RATYYGSPDC KANPRGHCGY GEFGRDINNG EVSGVSWRLW NNGTGCGACY QVRCKIPPHC SEEGVYVVAT
101: DSGEGDGTDF ILSPKAYGRM ARPGTENQLY SFGVVNVEYQ RIPCRYAGYN LVYKIHEKSY NPHYLAILVL YVGGVNDILA VEVWQEDCKE WRRMRRVFGA
201: VHDLQNPPRG TLTLRFLVYG SAGINWIQSP NAIPADWTAG ATYDSNILLT
101: DSGEGDGTDF ILSPKAYGRM ARPGTENQLY SFGVVNVEYQ RIPCRYAGYN LVYKIHEKSY NPHYLAILVL YVGGVNDILA VEVWQEDCKE WRRMRRVFGA
201: VHDLQNPPRG TLTLRFLVYG SAGINWIQSP NAIPADWTAG ATYDSNILLT
Arabidopsis Description
EXLB1Expansin-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WRS3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.