Factsheet for Solyc05g052330.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030395	Potato	cytosol, extracellular, mitochondrion, nucleus	46.27	95.38
Solyc07g049540.1.1	Tomato	extracellular	56.34	58.75
Solyc01g090820.1.1	Tomato	extracellular	48.51	50.58
HORVU2Hr1G013380.1	Barley	cytosol, extracellular, mitochondrion	44.4	50.21
TraesCS2B01G095600.1	Wheat	extracellular	47.01	49.41
GSMUA_Achr2P13730_001	Banana	extracellular	47.39	48.47
TraesCS2D01G078900.1	Wheat	extracellular	45.9	48.43
TraesCS2A01G081200.1	Wheat	extracellular	45.9	48.43
Solyc10g018500.1.1	Tomato	extracellular	47.76	48.3
GSMUA_Achr2P13750_001	Banana	extracellular	47.01	48.28
TraesCSU01G009600.1	Wheat	extracellular	45.15	47.83
CDY72505	Canola	cytosol	28.36	47.5
HORVU2Hr1G013360.1	Barley	extracellular	44.4	47.41
TraesCS2A01G580300.1	Wheat	extracellular	44.03	47.39
TraesCS2D01G592900.1	Wheat	extracellular	44.03	47.39
CDY72655	Canola	cytosol, plastid	29.85	47.34
GSMUA_Achr2P13740_001	Banana	extracellular	46.27	47.33
TraesCS2A01G080800.1	Wheat	extracellular	44.78	47.24
TraesCS2D01G078800.1	Wheat	extracellular	44.78	47.24
AT1G65681.1	Thale cress	cytosol	38.81	46.64
TraesCS2A01G580200.1	Wheat	extracellular	43.66	46.61
Os04t0552000-00	Rice	extracellular	45.9	46.59
TraesCS2B01G607400.1	Wheat	extracellular	43.28	46.59
TraesCS2B01G095700.1	Wheat	extracellular	43.66	46.43
CDY18950	Canola	cytosol, extracellular, plastid	41.04	46.41
CDY72345	Canola	cytosol	42.16	46.31
Zm00001d051368_P001	Maize	extracellular	27.24	46.2
TraesCS2D01G078600.1	Wheat	extracellular	41.04	46.03
TraesCS2D01G104800.1	Wheat	extracellular	43.28	45.67
AT2G45110.1	Thale cress	extracellular	44.03	45.56
TraesCS2B01G122100.1	Wheat	extracellular	32.46	45.55
TraesCS6A01G249400.2	Wheat	extracellular	44.78	45.28
TraesCS2A01G413600.1	Wheat	extracellular	44.03	45.04
TraesCS6A01G249700.1	Wheat	extracellular	44.4	44.74
TraesCS6D01G231400.1	Wheat	extracellular	44.4	44.74
EES07509	Sorghum	extracellular	44.03	44.7
TraesCS2B01G432300.1	Wheat	plastid	43.66	44.66
TraesCS2D01G411000.1	Wheat	extracellular	43.66	44.66
Zm00001d017493_P001	Maize	extracellular	44.4	44.57
HORVU0Hr1G016380.2	Barley	extracellular	44.03	44.53
TraesCS2A01G105200.1	Wheat	extracellular	42.16	44.49
Os05t0246300-01	Rice	extracellular	43.66	44.32
Zm00001d045861_P001	Maize	mitochondrion	43.66	44.15
EES11234	Sorghum	extracellular	42.91	43.73
CDX74711	Canola	extracellular	42.54	43.68
KXG19818	Sorghum	extracellular	42.16	43.63
Zm00001d045792_P001	Maize	extracellular	43.66	43.33
EER88254	Sorghum	extracellular	41.79	43.24
Os02t0658600-00	Rice	plastid	44.03	43.22
Zm00001d026170_P001	Maize	extracellular	42.16	43.13
CDX96901	Canola	extracellular	42.16	42.64
CDX83404	Canola	extracellular	41.04	42.47
Bra000370.1-P	Field mustard	extracellular	41.04	42.47
Bra035987.1-P	Field mustard	extracellular	41.79	42.26
CDY14888	Canola	extracellular	41.79	42.26
CDY18946	Canola	extracellular	41.42	41.73
Solyc01g090810.2.1	Tomato	extracellular	42.16	41.09
HORVU2Hr1G097480.1	Barley	extracellular	43.28	40.99
CDX67835	Canola	extracellular	39.18	39.47
Bra003421.1-P	Field mustard	extracellular	39.18	39.47
AT3G60570.1	Thale cress	extracellular	38.81	39.39
Solyc03g093390.2.1	Tomato	extracellular, nucleus	41.79	39.3
Solyc07g054170.2.1	Tomato	extracellular	38.81	38.95
CDY71186	Canola	extracellular	39.18	38.75
HORVU2Hr1G013340.1	Barley	extracellular	42.16	38.7
Solyc10g008440.2.1	Tomato	extracellular	37.31	38.17
GSMUA_AchrUn_...	Banana	extracellular	25.37	37.78
CDX95627	Canola	extracellular	38.81	37.28
TraesCS5D01G384200.1	Wheat	extracellular	42.16	36.69
TraesCS5B01G376500.1	Wheat	extracellular	42.16	36.57
Bra004891.1-P	Field mustard	cytosol, nucleus, plastid	18.28	35.51
KXG37946	Sorghum	extracellular	40.3	33.23
Os03t0645000-00	Rice	mitochondrion	38.81	33.23
EER93754	Sorghum	extracellular	36.57	32.03
Solyc08g077330.2.1	Tomato	extracellular	30.22	31.76
Solyc08g077910.2.1	Tomato	extracellular	29.1	31.08
Solyc06g060970.1.1	Tomato	extracellular	27.24	29.44
CDY48362	Canola	extracellular	38.81	29.13
Bra014484.1-P	Field mustard	extracellular	38.81	28.89
Solyc08g077900.2.1	Tomato	extracellular	26.49	28.06
HORVU5Hr1G092910.9	Barley	plastid	41.79	27.05
Solyc01g112000.2.1	Tomato	extracellular	25.37	26.05
Zm00001d033231_P003	Maize	extracellular	37.31	14.01

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:35.1	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0019953	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908
UniProt:K4C1R4	InterPro:LolPI	PFAM:PF01357	PFAM:PF03330	PRINTS:PR00829	PRINTS:PR01225
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692	PANTHER:PTHR31692:SF3	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf
SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	EnsemblPlantsGene:Solyc05g052330.1	EnsemblPlants:Solyc05g052330.1.1	TMHMM:TMhelix
UniParc:UPI0002765D05	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:62591447..62593379

Molecular Weight (calculated)

29750.2 Da

IEP (calculated)

4.610

GRAVY (calculated)

-0.152

Length

268 amino acids

Sequence
(BLAST)

001: MVMVSNFPKN KYILIFIYIV LDLVNFYSCQ SFINSDLDAT GFSLAVATWY GDPTGAGSGG ACGLEDDVGK IPYNAMITAG NQVLFKHGLG CGACYQVLCN
101: QNEECSQNPI TVTLTDECPG TCNDDPIHFD LSGNAFGAMA KFGQADQLRS LGRIDIYYKR VSCDHKQNIM FKVEKGSNPY FLAIAIEAQN GDGDLSLVEI
201: KHTNSNEWLQ MQQMFGATWS INIYPDTQIP PFSIRLTSQN KHQVEANNVI PINWQAREIY YSNVNFSP

Best Arabidopsis Sequence Match ( AT2G45110.1 )
(BLAST)

001: MASSQRYFAL LALFAVSLKF CYCQNETIDV AGSGTAGVTW YGEPFGAGST GGACGYGSAV ANPPLYAMVS AGGPSLFNNG KGCGTCYQVV CIGHPACSGS
101: PITVTITDEC PGGPCASEPV HIDLSGKAMG ALAKPGQADQ LRSAGVIRVN YKRAACLYRG TNIVFRMDAG ANPYYISFVV EYENGDGDLS NVEIQPAGGS
201: FISMQEMRSA VWKVNSGSAL RGPFNIRLTS GESHKVIVAY NVIPANWKPD ESYRSIVNF

Arabidopsis Description

EXPB4Expansin-B4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHD1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.