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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular, plastid
Any Predictor:cytosol, plastid, secretory
BaCelLo:secretory
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY72345 Canola cytosol 94.94 92.21
CDX74711 Canola extracellular 94.94 86.21
CDY18946 Canola extracellular 95.36 84.96
CDY72505 Canola cytosol 49.37 73.12
CDX83404 Canola extracellular 79.75 72.97
CDY72655 Canola cytosol, plastid 50.63 71.01
AT1G65681.1 Thale cress cytosol 66.67 70.85
AT2G45110.1 Thale cress extracellular 76.37 69.88
CDX96901 Canola extracellular 72.57 64.91
CDY14888 Canola extracellular 71.73 64.15
CDX95627 Canola extracellular 75.11 63.8
HORVU2Hr1G013380.1 Barley cytosol, extracellular, mitochondrion 54.85 54.85
HORVU2Hr1G013360.1 Barley extracellular 55.7 52.59
TraesCS2B01G095600.1 Wheat extracellular 56.54 52.55
TraesCS2D01G078900.1 Wheat extracellular 55.7 51.97
TraesCS2A01G081200.1 Wheat extracellular 55.7 51.97
TraesCS2B01G607400.1 Wheat extracellular 54.01 51.41
TraesCSU01G009600.1 Wheat extracellular 54.85 51.38
TraesCS2D01G592900.1 Wheat extracellular 53.59 51.0
Zm00001d051368_P001 Maize extracellular 33.76 50.63
TraesCS2A01G580200.1 Wheat extracellular 53.59 50.6
TraesCS2A01G080800.1 Wheat extracellular 54.01 50.39
EES07509 Sorghum extracellular 56.12 50.38
TraesCS2A01G580300.1 Wheat extracellular 52.74 50.2
Zm00001d017493_P001 Maize extracellular 56.54 50.19
TraesCS2D01G078800.1 Wheat extracellular 53.59 50.0
TraesCS2B01G095700.1 Wheat extracellular 52.74 49.6
TraesCS2B01G122100.1 Wheat extracellular 39.66 49.21
HORVU0Hr1G016380.2 Barley extracellular 54.85 49.06
KXG19818 Sorghum extracellular 53.59 49.03
Os04t0552000-00 Rice extracellular 54.43 48.86
TraesCS2D01G104800.1 Wheat extracellular 52.32 48.82
Zm00001d045861_P001 Maize mitochondrion 54.43 48.68
EER88254 Sorghum extracellular 53.16 48.65
TraesCS2D01G078600.1 Wheat extracellular 48.95 48.54
CDX67835 Canola extracellular 54.43 48.5
TraesCS2B01G432300.1 Wheat plastid 53.59 48.47
TraesCS2A01G413600.1 Wheat extracellular 53.59 48.47
GSMUA_Achr2P13740_001 Banana extracellular 53.59 48.47
TraesCS6A01G249700.1 Wheat extracellular 54.01 48.12
CDY71186 Canola extracellular 54.85 47.97
Zm00001d045792_P001 Maize extracellular 54.43 47.78
GSMUA_Achr2P13730_001 Banana extracellular 52.74 47.71
TraesCS2D01G411000.1 Wheat extracellular 52.74 47.71
TraesCS6A01G249400.2 Wheat extracellular 53.16 47.55
GSMUA_Achr2P13750_001 Banana extracellular 52.32 47.51
TraesCS6D01G231400.1 Wheat extracellular 53.16 47.37
Zm00001d026170_P001 Maize extracellular 52.32 47.33
CDY18948 Canola extracellular 38.82 47.18
Solyc10g018500.1.1 Tomato extracellular 52.74 47.17
TraesCS2A01G105200.1 Wheat extracellular 50.21 46.85
Os05t0246300-01 Rice extracellular 51.9 46.59
EES11234 Sorghum extracellular 51.05 46.01
Os02t0658600-00 Rice plastid 52.74 45.79
CDY70406 Canola extracellular 51.9 44.89
CDX74710 Canola extracellular 51.48 44.53
HORVU2Hr1G097480.1 Barley extracellular 53.16 44.52
CDY18951 Canola extracellular 51.05 44.0
Solyc01g090820.1.1 Tomato extracellular 47.68 43.97
Solyc07g049540.1.1 Tomato extracellular 45.99 42.41
PGSC0003DMT400030395 Potato cytosol, extracellular, mitochondrion, nucleus 22.78 41.54
HORVU2Hr1G013340.1 Barley extracellular 50.63 41.1
Solyc05g052330.1.1 Tomato extracellular 46.41 41.04
CDY18990 Canola extracellular 43.88 39.25
PGSC0003DMT400095086 Potato plastid 41.35 39.2
GSMUA_AchrUn_... Banana extracellular 29.54 38.89
CDY05789 Canola extracellular 43.04 38.49
CDY58728 Canola extracellular 42.62 38.11
CDY31940 Canola extracellular 42.62 38.11
CDY70556 Canola extracellular 42.62 38.11
TraesCS5B01G376500.1 Wheat extracellular 49.37 37.86
TraesCS5D01G384200.1 Wheat extracellular 48.95 37.66
Os03t0645000-00 Rice mitochondrion 48.95 37.06
EER93754 Sorghum extracellular 46.41 35.95
KXG37946 Sorghum extracellular 48.52 35.38
CDY48362 Canola extracellular 52.74 35.01
CDX74713 Canola extracellular 48.95 33.82
HORVU5Hr1G092910.9 Barley plastid 48.52 27.78
CDY42954 Canola extracellular 28.27 26.8
CDY35606 Canola extracellular 27.85 26.4
CDY09659 Canola plasma membrane 27.85 26.4
CDY65447 Canola extracellular 27.85 26.4
CDX90493 Canola cytosol, extracellular, nucleus 13.92 25.19
CDY69288 Canola extracellular 27.43 24.62
CDY52801 Canola extracellular 27.43 24.16
CDY64278 Canola extracellular 27.0 24.15
CDY72634 Canola extracellular 27.0 24.15
CDY61895 Canola extracellular 27.0 23.79
Zm00001d033231_P003 Maize extracellular 45.99 15.27
Protein Annotations
Gene3D:2.40.40.10Gene3D:2.60.40.760MapMan:35.1GO:A0A078FX02UniProt:A0A078FX02EnsemblPlants:CDY18950
ProteinID:CDY18950ProteinID:CDY18950.1InterPro:Expan_Lol_pIInterPro:Expansin/allergen_DPBB_domInterPro:Expansin_CBDInterPro:Expansin_CBD_sf
GO:GO:0000003GO:GO:0005575GO:GO:0005576GO:GO:0008150GO:GO:0019953EnsemblPlantsGene:GSBRNA2T00006165001
InterPro:IPR007112InterPro:IPR007117InterPro:IPR036749InterPro:IPR036908InterPro:LolPIPFAM:PF01357
PFAM:PF03330PRINTS:PR00829PRINTS:PR01225PFscan:PS50842PFscan:PS50843PANTHER:PTHR31692
PANTHER:PTHR31692:SF3InterPro:RlpA-like_DPBBInterPro:RlpA-like_sfSMART:SM00837SUPFAM:SSF49590SUPFAM:SSF50685
UniParc:UPI0004EE4FB0SEG:seg::::
Description
BnaC04g04000DBnaC04g04000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FX02]
Coordinates
chrLK032090:-:596879..599525
Molecular Weight (calculated)
24590.1 Da
IEP (calculated)
4.812
GRAVY (calculated)
-0.059
Length
237 amino acids
Sequence
(BLAST)
001: MKKINAAGWA DADAGATWYG EPEGAGSTGG ACEYGVAVAN PPLYAMVSAG GPSLFNNGKG CGTCYEIMCT GNPACSGSPI TVTITDECPG GPCVSEPVHF
101: DLSGKAMGAL AKPGQAAQLR SAGPLSVSYR RAACLYQGTK IAFHVDAGST PFYVAFVVEY ENGEGDLASV EIQPASGGFM PMQEMRSAEW KLNSGSPLSG
201: PFNVRLTSGE SRKVVVAQAV IPADWKPDQI YRSIVNF
Best Arabidopsis Sequence Match ( AT1G65681.1 )
(BLAST)
001: MIGELDFPFL GAGSTGGACG FAVANPPLYG MVSAGGPSVF NNGIGCGTCF QILCNGHPAC SRRPITVTIT DECPGGPCAS EPAHFDLSGK AMGALARPGQ
101: GDRLRSAGVL RVYYRRVECL YRRTNIAFRM DPGANPYYIS FVVEYENGDG DLAYIEIQPA DGEFIPMQEM RSAVWKISSG SPLTGPFNIR LTSAESHKVV
201: LAYNVIPANW KPNETYRSVV NFK
Arabidopsis Description
EXPB6Expansin-B6 [Source:UniProtKB/Swiss-Prot;Acc:F4IBJ3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.