Factsheet for PGSC0003DMT400030395

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, nucleus, cytosol

Predictor Summary:

plastid 1
golgi 1
extracellular 2
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052330.1.1	Tomato	extracellular	95.38	46.27
CDY72505	Canola	cytosol	41.54	33.75
CDY72655	Canola	cytosol, plastid	40.77	31.36
Bra004891.1-P	Field mustard	cytosol, nucleus, plastid	33.08	31.16
TraesCS2B01G122100.1	Wheat	extracellular	40.77	27.75
PGSC0003DMT400095086	Potato	plastid	53.08	27.6
TraesCS2B01G095600.1	Wheat	extracellular	51.54	26.27
HORVU2Hr1G013380.1	Barley	cytosol, extracellular, mitochondrion	47.69	26.16
HORVU2Hr1G013360.1	Barley	extracellular	49.23	25.5
TraesCS2D01G078900.1	Wheat	extracellular	49.23	25.2
TraesCS2A01G081200.1	Wheat	extracellular	49.23	25.2
AT1G65681.1	Thale cress	cytosol	43.08	25.11
TraesCS2D01G078600.1	Wheat	extracellular	46.15	25.1
TraesCS2D01G104800.1	Wheat	extracellular	48.46	24.8
TraesCSU01G009600.1	Wheat	extracellular	47.69	24.51
TraesCS2A01G080800.1	Wheat	extracellular	47.69	24.41
TraesCS2A01G105200.1	Wheat	extracellular	46.92	24.02
TraesCS2D01G078800.1	Wheat	extracellular	46.92	24.02
PGSC0003DMT400048506	Potato	plastid	35.38	23.71
GSMUA_Achr2P13730_001	Banana	extracellular	47.69	23.66
TraesCS2A01G580200.1	Wheat	extracellular	45.38	23.51
Os04t0552000-00	Rice	extracellular	47.69	23.48
TraesCS2B01G095700.1	Wheat	extracellular	45.38	23.41
TraesCS6A01G249400.2	Wheat	extracellular	47.69	23.4
TraesCS6D01G231400.1	Wheat	extracellular	47.69	23.31
TraesCS2A01G580300.1	Wheat	extracellular	44.62	23.29
TraesCS2D01G592900.1	Wheat	extracellular	44.62	23.29
AT2G45110.1	Thale cress	extracellular	46.15	23.17
HORVU0Hr1G016380.2	Barley	extracellular	46.92	23.02
Zm00001d045861_P001	Maize	mitochondrion	46.92	23.02
TraesCS6A01G249700.1	Wheat	extracellular	46.92	22.93
TraesCS2B01G607400.1	Wheat	extracellular	43.85	22.89
Zm00001d017493_P001	Maize	extracellular	46.92	22.85
CDY18950	Canola	cytosol, extracellular, plastid	41.54	22.78
KXG19818	Sorghum	extracellular	45.38	22.78
GSMUA_Achr2P13750_001	Banana	extracellular	45.38	22.61
Zm00001d045792_P001	Maize	extracellular	46.92	22.59
GSMUA_Achr2P13740_001	Banana	extracellular	45.38	22.52
TraesCS2A01G413600.1	Wheat	extracellular	45.38	22.52
EES11234	Sorghum	extracellular	45.38	22.43
EER88254	Sorghum	extracellular	44.62	22.39
EES07509	Sorghum	extracellular	45.38	22.35
TraesCS2B01G432300.1	Wheat	plastid	44.62	22.14
TraesCS2D01G411000.1	Wheat	extracellular	44.62	22.14
CDY72345	Canola	cytosol	41.54	22.13
Os02t0658600-00	Rice	plastid	46.15	21.98
Zm00001d026170_P001	Maize	extracellular	43.85	21.76
Os05t0246300-01	Rice	extracellular	43.85	21.59
CDX96901	Canola	extracellular	43.08	21.13
Bra000370.1-P	Field mustard	extracellular	41.54	20.85
CDX83404	Canola	extracellular	41.54	20.85
CDY14888	Canola	extracellular	42.31	20.75
Bra035987.1-P	Field mustard	extracellular	42.31	20.75
CDX74711	Canola	extracellular	41.54	20.69
HORVU2Hr1G013340.1	Barley	extracellular	46.15	20.55
CDY18946	Canola	extracellular	41.54	20.3
HORVU2Hr1G097480.1	Barley	extracellular	43.85	20.14
Bra003421.1-P	Field mustard	extracellular	40.77	19.92
CDX67835	Canola	extracellular	40.77	19.92
PGSC0003DMT400055827	Potato	extracellular	39.23	19.47
TraesCS5B01G376500.1	Wheat	extracellular	46.15	19.42
CDY71186	Canola	extracellular	40.0	19.19
TraesCS5D01G384200.1	Wheat	extracellular	45.38	19.16
AT3G60570.1	Thale cress	extracellular	38.46	18.94
PGSC0003DMT400047177	Potato	extracellular	38.46	18.73
PGSC0003DMT400052810	Potato	extracellular	34.62	17.79
PGSC0003DMT400068379	Potato	mitochondrion	30.77	17.78
PGSC0003DMT400004660	Potato	extracellular	33.85	17.25
CDX95627	Canola	extracellular	36.92	17.2
Os03t0645000-00	Rice	mitochondrion	40.77	16.93
KXG37946	Sorghum	extracellular	42.31	16.92
PGSC0003DMT400067456	Potato	extracellular	31.54	16.21
EER93754	Sorghum	extracellular	36.92	15.69
PGSC0003DMT400067458	Potato	extracellular	30.0	15.54
PGSC0003DMT400047948	Potato	extracellular	30.0	15.0
PGSC0003DMT400067459	Potato	extracellular	28.46	14.74
CDY48362	Canola	extracellular	40.0	14.57
Bra014484.1-P	Field mustard	extracellular	40.0	14.44
HORVU5Hr1G092910.9	Barley	plastid	45.38	14.25
GSMUA_AchrUn_...	Banana	extracellular	16.92	12.22
PGSC0003DMT400066943	Potato	cytosol, plastid, vacuole	43.08	12.2
Zm00001d051368_P001	Maize	extracellular	11.54	9.49
Zm00001d033231_P003	Maize	extracellular	38.46	7.0

Protein Annotations

Gene3D:2.60.40.760	MapMan:35.1	InterPro:Expan_Lol_pI	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0000003
GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0019953	InterPro:IPR007117	InterPro:IPR036749
InterPro:LolPI	UniProt:M1AU60	PFAM:PF01357	EnsemblPlantsGene:PGSC0003DMG400011638	PGSC:PGSC0003DMG400011638	EnsemblPlants:PGSC0003DMT400030395
PRINTS:PR00829	PRINTS:PR01225	PFscan:PS50843	PANTHER:PTHR31692	PANTHER:PTHR31692:SF3	SUPFAM:SSF49590
UniParc:UPI0002962783	:	:	:	:	:

Description

Beta-expansin [Source:PGSC_GENE;Acc:PGSC0003DMG400011638]

Coordinates

chr5:-:47584112..47584804

Molecular Weight (calculated)

15065.8 Da

IEP (calculated)

7.722

GRAVY (calculated)

-0.527

Length

130 amino acids

Sequence
(BLAST)

001: MAKFGQADQL RNLGRIDIYY KRVSCDHKQN IMFKVERGSN PHFLAIAIEA QNGDGDLSLV EIKHTNSNEW LHMQQMFGAT WSINIYPDTQ IPPFSIRLTS
101: QNKHQVQADN VIPINWQARE IYYSNVNFSP

Best Arabidopsis Sequence Match ( AT1G65681.1 )
(BLAST)

001: MIGELDFPFL GAGSTGGACG FAVANPPLYG MVSAGGPSVF NNGIGCGTCF QILCNGHPAC SRRPITVTIT DECPGGPCAS EPAHFDLSGK AMGALARPGQ
101: GDRLRSAGVL RVYYRRVECL YRRTNIAFRM DPGANPYYIS FVVEYENGDG DLAYIEIQPA DGEFIPMQEM RSAVWKISSG SPLTGPFNIR LTSAESHKVV
201: LAYNVIPANW KPNETYRSVV NFK

Arabidopsis Description

EXPB6Expansin-B6 [Source:UniProtKB/Swiss-Prot;Acc:F4IBJ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.