Subcellular Localization
min:
: max
Winner_takes_all: plastid, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g090810.2.1 | Tomato | extracellular | 45.32 | 75.64 |
| PGSC0003DMT400048506 | Potato | plastid | 25.49 | 60.31 |
| HORVU2Hr1G013380.1 | Barley | cytosol, extracellular, mitochondrion | 29.41 | 56.96 |
| Os04t0552000-00 | Rice | extracellular | 32.24 | 56.06 |
| TraesCS2B01G122100.1 | Wheat | extracellular | 23.09 | 55.5 |
| TraesCS2A01G413600.1 | Wheat | extracellular | 31.59 | 55.34 |
| TraesCS2D01G411000.1 | Wheat | extracellular | 31.59 | 55.34 |
| Zm00001d026170_P001 | Maize | extracellular | 31.37 | 54.96 |
| TraesCS2B01G432300.1 | Wheat | plastid | 31.37 | 54.96 |
| HORVU2Hr1G013360.1 | Barley | extracellular | 29.85 | 54.58 |
| Os05t0246300-01 | Rice | extracellular | 31.37 | 54.55 |
| KRH75302 | Soybean | extracellular | 32.9 | 54.51 |
| EES11234 | Sorghum | extracellular | 31.15 | 54.37 |
| Zm00001d017493_P001 | Maize | extracellular | 31.37 | 53.93 |
| KRG88934 | Soybean | extracellular, vacuole | 32.46 | 53.79 |
| TraesCS2B01G095600.1 | Wheat | extracellular | 29.85 | 53.73 |
| EES07509 | Sorghum | extracellular | 30.5 | 53.03 |
| TraesCS2B01G607400.1 | Wheat | extracellular | 28.76 | 53.01 |
| TraesCS2D01G592900.1 | Wheat | extracellular | 28.54 | 52.61 |
| TraesCS2A01G580200.1 | Wheat | extracellular | 28.54 | 52.19 |
| KXG19818 | Sorghum | extracellular | 29.41 | 52.12 |
| Zm00001d045861_P001 | Maize | mitochondrion | 30.07 | 52.08 |
| TraesCS2B01G095700.1 | Wheat | extracellular | 28.54 | 51.98 |
| TraesCS2D01G078900.1 | Wheat | extracellular | 28.76 | 51.97 |
| TraesCS2A01G580300.1 | Wheat | extracellular | 28.1 | 51.81 |
| EER88254 | Sorghum | extracellular | 29.19 | 51.74 |
| Os02t0658600-00 | Rice | plastid | 30.72 | 51.65 |
| HORVU2Hr1G097480.1 | Barley | extracellular | 31.81 | 51.59 |
| TraesCS2D01G078800.1 | Wheat | extracellular | 28.54 | 51.57 |
| TraesCS2A01G081200.1 | Wheat | extracellular | 28.54 | 51.57 |
| KRH33426 | Soybean | extracellular | 30.5 | 51.47 |
| KRH33423 | Soybean | extracellular | 30.94 | 51.26 |
| Zm00001d045792_P001 | Maize | extracellular | 30.07 | 51.11 |
| TraesCS6A01G249700.1 | Wheat | extracellular | 29.41 | 50.75 |
| TraesCSU01G009600.1 | Wheat | extracellular | 27.89 | 50.59 |
| HORVU0Hr1G016380.2 | Barley | extracellular | 29.19 | 50.57 |
| TraesCS2A01G080800.1 | Wheat | extracellular | 27.89 | 50.39 |
| TraesCS2D01G104800.1 | Wheat | extracellular | 27.89 | 50.39 |
| TraesCS6D01G231400.1 | Wheat | extracellular | 29.19 | 50.38 |
| TraesCS6A01G249400.2 | Wheat | extracellular | 28.76 | 49.81 |
| GSMUA_Achr2P13730_001 | Banana | extracellular | 28.32 | 49.62 |
| GSMUA_Achr2P13740_001 | Banana | extracellular | 28.1 | 49.24 |
| TraesCS2A01G105200.1 | Wheat | extracellular | 27.23 | 49.21 |
| Zm00001d051368_P001 | Maize | extracellular | 16.78 | 48.73 |
| GSMUA_Achr2P13750_001 | Banana | extracellular | 26.58 | 46.74 |
| TraesCS2D01G078600.1 | Wheat | extracellular | 24.18 | 46.44 |
| KRH65410 | Soybean | extracellular | 26.8 | 46.07 |
| TraesCS5D01G384200.1 | Wheat | extracellular | 29.85 | 44.48 |
| Os03t0645000-00 | Rice | mitochondrion | 30.28 | 44.41 |
| TraesCS5B01G376500.1 | Wheat | extracellular | 29.63 | 44.01 |
| HORVU2Hr1G013340.1 | Barley | extracellular | 27.45 | 43.15 |
| EER93754 | Sorghum | extracellular | 28.76 | 43.14 |
| PGSC0003DMT400030395 | Potato | cytosol, extracellular, mitochondrion, nucleus | 12.2 | 43.08 |
| GSMUA_AchrUn_... | Banana | extracellular | 15.9 | 40.56 |
| PGSC0003DMT400095086 | Potato | plastid | 21.57 | 39.6 |
| KXG37946 | Sorghum | extracellular | 27.67 | 39.08 |
| PGSC0003DMT400047177 | Potato | extracellular | 22.0 | 37.83 |
| PGSC0003DMT400055827 | Potato | extracellular | 20.48 | 35.88 |
| HORVU5Hr1G092910.9 | Barley | plastid | 28.98 | 32.13 |
| PGSC0003DMT400068379 | Potato | mitochondrion | 14.81 | 30.22 |
| PGSC0003DMT400067459 | Potato | extracellular | 15.69 | 28.69 |
| PGSC0003DMT400067458 | Potato | extracellular | 14.81 | 27.09 |
| PGSC0003DMT400052810 | Potato | extracellular | 14.81 | 26.88 |
| PGSC0003DMT400047948 | Potato | extracellular | 14.6 | 25.77 |
| PGSC0003DMT400067456 | Potato | extracellular | 14.16 | 25.69 |
| PGSC0003DMT400004660 | Potato | extracellular | 13.94 | 25.1 |
| Zm00001d033231_P003 | Maize | extracellular | 28.32 | 18.21 |
Protein Annotations
| Gene3D:2.40.40.10 | Gene3D:2.60.40.760 | MapMan:35.1 | InterPro:Expan_Lol_pI | InterPro:Expansin/allergen_DPBB_dom | InterPro:Expansin_CBD |
| InterPro:Expansin_CBD_sf | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0008150 | GO:GO:0019953 |
| InterPro:IPR007112 | InterPro:IPR007117 | InterPro:IPR036749 | InterPro:IPR036908 | InterPro:LolPI | UniProt:M1CGF1 |
| PFAM:PF01357 | PFAM:PF03330 | EnsemblPlantsGene:PGSC0003DMG400026022 | PGSC:PGSC0003DMG400026022 | EnsemblPlants:PGSC0003DMT400066943 | PRINTS:PR00829 |
| PRINTS:PR01225 | PFscan:PS50842 | PFscan:PS50843 | PANTHER:PTHR31692 | PANTHER:PTHR31692:SF3 | InterPro:RlpA-like_DPBB |
| InterPro:RlpA-like_sf | SMART:SM00837 | SUPFAM:SSF49590 | SUPFAM:SSF50685 | UniParc:UPI00029495A5 | : |
Description
Beta expansin 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400026022]
Coordinates
chr1:+:70112847..70117387
Molecular Weight (calculated)
48266.9 Da
IEP (calculated)
7.418
GRAVY (calculated)
-0.108
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MYQKFNQIPT GPQPELLGGA CGYTNAVDQP PFSSLIAAAG PSLFKSGKGC GACYQVKCTG NKACSGKPVR VVITDSCPGG PCLSESAHFD LSGTSFGAMA
101: ISGQADQLRN AGVLQVQYKR VECNYPGVKL TFHVDSGSNS NYFAALVEYE DGDGDLNRVD LKQALDSESW QPMQQSWGAV WKLDSGSSLV APFSLKLTGE
201: SGQTVVANGV IPAALCLLQY CTCAHVKSLN ASIASFQPAV ATFYGPPTGA GSDGGACGFT DAVSKPPFNS FISAGNGPLF KEGFGCGSCY QVLCNLGPCS
301: GRPVTVTITD ECPGCSGAFH FDLSGTAMGA LAKPGQANAL RNIGNIPISY QRVPCDYNNW KIGFKVDLGS NPNFLSVNVE FQNGDGDLSL VEFLPARSNQ
401: AIRANHVFGA TWSKNINPSA QPAPYSIRLT SGSNKKLTAT NVIPVGWQPG RTYWSNVNF
101: ISGQADQLRN AGVLQVQYKR VECNYPGVKL TFHVDSGSNS NYFAALVEYE DGDGDLNRVD LKQALDSESW QPMQQSWGAV WKLDSGSSLV APFSLKLTGE
201: SGQTVVANGV IPAALCLLQY CTCAHVKSLN ASIASFQPAV ATFYGPPTGA GSDGGACGFT DAVSKPPFNS FISAGNGPLF KEGFGCGSCY QVLCNLGPCS
301: GRPVTVTITD ECPGCSGAFH FDLSGTAMGA LAKPGQANAL RNIGNIPISY QRVPCDYNNW KIGFKVDLGS NPNFLSVNVE FQNGDGDLSL VEFLPARSNQ
401: AIRANHVFGA TWSKNINPSA QPAPYSIRLT SGSNKKLTAT NVIPVGWQPG RTYWSNVNF
001: MTILVVDRYY MLMNLLFALT CLLLNLTHCF SPKKFNISAA TTSDSDWSIA GSTWYGNPTG YGSDGGACGY GNAVAQPPFS KMVSAGGPSL FKSGKGCGAC
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF
Arabidopsis Description
EXPB2Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.