Factsheet for PGSC0003DMT400047177

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g054170.2.1	Tomato	extracellular	97.75	97.75
VIT_12s0059g00190.t01	Wine grape	extracellular	71.54	73.75
GSMUA_AchrUn_...	Banana	extracellular	69.66	70.72
PGSC0003DMT400055827	Potato	extracellular	69.29	70.61
KRH55988	Soybean	extracellular	69.29	69.29
KRH25552	Soybean	extracellular	68.54	68.54
GSMUA_Achr1P00120_001	Banana	extracellular	67.79	68.05
GSMUA_Achr5P12080_001	Banana	extracellular	67.42	67.42
KRH26935	Soybean	extracellular	65.54	67.05
Os02t0639500-01	Rice	extracellular	64.42	65.9
Zm00001d017377_P001	Maize	extracellular	65.92	65.67
AT4G28250.1	Thale cress	extracellular	64.42	65.15
CDY70556	Canola	extracellular	64.42	64.91
CDY58728	Canola	extracellular	64.42	64.91
Bra024215.1-P	Field mustard	extracellular	64.42	64.91
EES05488	Sorghum	extracellular	65.92	64.47
TraesCS6D01G218500.1	Wheat	extracellular	64.42	64.18
Bra026272.1-P	Field mustard	extracellular	63.67	64.15
TraesCS6A01G235800.1	Wheat	extracellular	64.04	64.04
CDY18990	Canola	extracellular	63.3	63.77
KRH22402	Soybean	extracellular	61.42	63.57
TraesCS6B01G264400.1	Wheat	extracellular	63.67	63.43
HORVU6Hr1G060410.7	Barley	extracellular	63.3	63.06
CDY05789	Canola	extracellular	62.55	63.02
AT2G20750.1	Thale cress	extracellular	63.67	62.73
Bra036499.1-P	Field mustard	extracellular	61.8	62.26
CDY31940	Canola	extracellular	61.8	62.26
TraesCS2D01G369200.2	Wheat	extracellular	62.55	59.86
TraesCS2A01G373000.1	Wheat	extracellular	62.55	59.43
TraesCS2B01G390000.1	Wheat	extracellular	62.17	59.07
Zm00001d002860_P002	Maize	extracellular	62.92	55.08
PGSC0003DMT400048506	Potato	plastid	31.84	43.81
PGSC0003DMT400030395	Potato	cytosol, extracellular, mitochondrion, nucleus	18.73	38.46
PGSC0003DMT400095086	Potato	plastid	33.71	36.0
Os04t0530100-01	Rice	extracellular, mitochondrion, vacuole	39.7	32.82
PGSC0003DMT400068379	Potato	mitochondrion	25.84	30.67
PGSC0003DMT400067458	Potato	extracellular	27.34	29.08
PGSC0003DMT400067459	Potato	extracellular	27.34	29.08
PGSC0003DMT400052810	Potato	extracellular	26.97	28.46
PGSC0003DMT400067456	Potato	extracellular	26.59	28.06
PGSC0003DMT400004660	Potato	extracellular	26.59	27.84
PGSC0003DMT400047948	Potato	extracellular	24.72	25.38
PGSC0003DMT400066943	Potato	cytosol, plastid, vacuole	37.83	22.0

Protein Annotations

EntrezGene:102598311	Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.3	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575	GO:GO:0005576	GO:GO:0006949
GO:GO:0008150	GO:GO:0009506	GO:GO:0009653	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0019953	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	InterPro:LolPI
UniProt:M1BK85	PFAM:PF01357	PFAM:PF03330	EnsemblPlantsGene:PGSC0003DMG400018312	PGSC:PGSC0003DMG400018312	EnsemblPlants:PGSC0003DMT400047177
PRINTS:PR00829	PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692	PANTHER:PTHR31692:SF5
InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	TMHMM:TMhelix
UniParc:UPI000295F3AA	RefSeq:XP_006357491.1	:	:	:	:

Description

Beta-expansin 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400018312]

Coordinates

chr7:-:48987152..48991768

Molecular Weight (calculated)

28953.5 Da

IEP (calculated)

8.551

GRAVY (calculated)

-0.052

Length

267 amino acids

Sequence
(BLAST)

001: METHSQNFSF TKFYSVVAVV VIFWPFMASA GPLRRVVDTH WYPATATWYG SPEGDGSTGG ACGYGSMVDV KPFRARVGAV SPILFKNGEG CGACYKVKCL
101: DSSVCSRRAA TVIITDECPG GYCSGGRVHF DLSGAAFGHM AVSGYGGSLR DRGVISILYR RTLCKYPGKN IAFHVNEGST PYWLSLLVEF EDGDGDVGSM
201: HIREARSNQW IEMSHLWGAN WAIIGGPMQG PFSVKLTTLS TGRALSARDV IPGNWSPKAT YTSRLNF

Best Arabidopsis Sequence Match ( AT4G28250.1 )
(BLAST)

001: MQLFPVMLAT LCIVLQLLIG SSALATTNRH VSNSHWLPAV ATWYGSPNGD GSDGGACGYG TLVDVKPLHA RVGAVNPILF KNGEGCGACY KVRCLDKSIC
101: SRRAVTVIIT DECPGCSKTS THFDLSGAVF GRLAIAGESG PLRNRGLIPV IYRRTACKYR GKNIAFHVNE GSTDFWLSLL VEFEDGEGDI GSMHIRQAGA
201: REWLEMKHVW GANWCIIGGP LKGPFSIKLT TLSAGKTLSA TDVVPRNWAP KATYSSRLNF SPVL

Arabidopsis Description

EXPB3EXPB3 [Source:UniProtKB/TrEMBL;Acc:A0A178USU9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.