Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 5
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05789 | Canola | extracellular | 85.61 | 87.55 |
| CDY31940 | Canola | extracellular | 83.76 | 85.66 |
| Bra036499.1-P | Field mustard | extracellular | 83.76 | 85.66 |
| AT4G28250.1 | Thale cress | extracellular | 71.96 | 73.86 |
| VIT_12s0059g00190.t01 | Wine grape | extracellular | 62.73 | 65.64 |
| KRH26935 | Soybean | extracellular | 62.73 | 65.13 |
| Solyc07g054170.2.1 | Tomato | extracellular | 63.1 | 64.04 |
| PGSC0003DMT400055827 | Potato | extracellular | 61.62 | 63.74 |
| PGSC0003DMT400047177 | Potato | extracellular | 62.73 | 63.67 |
| KRH55988 | Soybean | extracellular | 62.73 | 63.67 |
| Os02t0639500-01 | Rice | extracellular | 61.25 | 63.6 |
| GSMUA_AchrUn_... | Banana | extracellular | 61.62 | 63.5 |
| KRH25552 | Soybean | extracellular | 62.36 | 63.3 |
| Solyc10g008440.2.1 | Tomato | extracellular | 60.52 | 62.6 |
| KRH22402 | Soybean | extracellular | 59.41 | 62.4 |
| TraesCS6D01G218500.1 | Wheat | extracellular | 61.62 | 62.31 |
| TraesCS6A01G235800.1 | Wheat | extracellular | 61.25 | 62.17 |
| GSMUA_Achr5P12080_001 | Banana | extracellular | 61.25 | 62.17 |
| Zm00001d017377_P001 | Maize | extracellular | 61.25 | 61.94 |
| GSMUA_Achr1P00120_001 | Banana | extracellular | 60.52 | 61.65 |
| TraesCS6B01G264400.1 | Wheat | extracellular | 60.89 | 61.57 |
| HORVU6Hr1G060410.7 | Barley | extracellular | 60.52 | 61.19 |
| EES05488 | Sorghum | extracellular | 61.62 | 61.17 |
| TraesCS2D01G369200.2 | Wheat | extracellular | 61.62 | 59.86 |
| TraesCS2A01G373000.1 | Wheat | extracellular | 61.99 | 59.79 |
| TraesCS2B01G390000.1 | Wheat | extracellular | 61.99 | 59.79 |
| Zm00001d002860_P002 | Maize | extracellular | 62.73 | 55.74 |
| AT1G65680.1 | Thale cress | extracellular | 41.33 | 41.03 |
| AT1G65681.1 | Thale cress | cytosol | 33.58 | 40.81 |
| AT2G45110.1 | Thale cress | extracellular | 36.9 | 38.61 |
| AT3G60570.1 | Thale cress | extracellular | 33.95 | 34.85 |
| Os04t0530100-01 | Rice | extracellular, mitochondrion, vacuole | 37.64 | 31.58 |
| AT4G17030.1 | Thale cress | extracellular | 27.68 | 30.0 |
| AT4G38400.1 | Thale cress | extracellular | 26.57 | 27.17 |
| AT3G45970.1 | Thale cress | extracellular | 25.83 | 26.42 |
| AT3G45960.2 | Thale cress | extracellular | 23.62 | 24.33 |
Protein Annotations
| Gene3D:2.40.40.10 | Gene3D:2.60.40.760 | MapMan:21.4.2.3 | EntrezGene:816604 | ProteinID:AAD20920.1 | ProteinID:AEC07066.1 |
| ArrayExpress:AT2G20750 | EnsemblPlantsGene:AT2G20750 | RefSeq:AT2G20750 | TAIR:AT2G20750 | RefSeq:AT2G20750-TAIR-G | EnsemblPlants:AT2G20750.1 |
| TAIR:AT2G20750.1 | Symbol:ATEXPB1 | EMBL:AY084478 | EMBL:BT003932 | EMBL:BT005024 | InterPro:Expan_Lol_pI |
| InterPro:Expansin/allergen_DPBB_dom | InterPro:Expansin_CBD | InterPro:Expansin_CBD_sf | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005618 | GO:GO:0005623 | GO:GO:0006949 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009653 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019953 | GO:GO:0030312 | GO:GO:0071555 |
| InterPro:IPR007112 | InterPro:IPR007117 | InterPro:IPR036749 | InterPro:IPR036908 | InterPro:LolPI | RefSeq:NP_179668.1 |
| PFAM:PF01357 | PFAM:PF03330 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007098 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0025022 | PRINTS:PR00829 | PRINTS:PR01225 |
| PFscan:PS50842 | PFscan:PS50843 | PANTHER:PTHR31692 | PANTHER:PTHR31692:SF26 | UniProt:Q9SKU2 | InterPro:RlpA-like_DPBB |
| InterPro:RlpA-like_sf | SMART:SM00837 | SUPFAM:SSF49590 | SUPFAM:SSF50685 | SignalP:SignalP-noTM | EMBL:U95967 |
| UniParc:UPI00000013DD | SEG:seg | : | : | : | : |
Description
EXPB1Expansin-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU2]
Coordinates
chr2:+:8940833..8942706
Molecular Weight (calculated)
29110.1 Da
IEP (calculated)
9.571
GRAVY (calculated)
-0.031
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MQLFPVILPT LCVFLHLLIS GSGSTPPLTH SNQQVAATRW LPATATWYGS AEGDGSSGGA CGYGSLVDVK PFKARVGAVS PILFKGGEGC GACYKVRCLD
101: KTICSKRAVT IIATDQSPSG PSAKAKHTHF DLSGAAFGHM AIPGHNGVIR NRGLLNILYR RTACKYRGKN IAFHVNAGST DYWLSLLIEY EDGEGDIGSM
201: HIRQAGSKEW ISMKHIWGAN WCIVEGPLKG PFSVKLTTLS NNKTLSATDV IPSNWVPKAT YTSRLNFSPV L
101: KTICSKRAVT IIATDQSPSG PSAKAKHTHF DLSGAAFGHM AIPGHNGVIR NRGLLNILYR RTACKYRGKN IAFHVNAGST DYWLSLLIEY EDGEGDIGSM
201: HIRQAGSKEW ISMKHIWGAN WCIVEGPLKG PFSVKLTTLS NNKTLSATDV IPSNWVPKAT YTSRLNFSPV L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.