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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • endoplasmic reticulum 1
  • golgi 1
  • extracellular 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, endoplasmic reticulum, extracellular, golgi
BaCelLo:endoplasmic reticulum, extracellular, golgi
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY72505 Canola cytosol 54.26 75.62
CDY72655 Canola cytosol, plastid 55.16 72.78
AT2G45110.1 Thale cress extracellular 77.58 66.8
CDY18950 Canola cytosol, extracellular, plastid 70.85 66.67
CDY72345 Canola cytosol 71.3 65.16
CDX96901 Canola extracellular 74.44 62.64
CDX83404 Canola extracellular 72.65 62.55
Bra000370.1-P Field mustard extracellular 72.65 62.55
CDY14888 Canola extracellular 73.54 61.89
Bra035987.1-P Field mustard extracellular 73.54 61.89
CDX74711 Canola extracellular 71.75 61.3
CDY18946 Canola extracellular 71.3 59.77
Bra004891.1-P Field mustard cytosol, nucleus, plastid 36.32 58.7
CDX95627 Canola extracellular 68.61 54.84
HORVU2Hr1G013380.1 Barley cytosol, extracellular, mitochondrion 52.91 49.79
HORVU2Hr1G013360.1 Barley extracellular 54.26 48.21
TraesCS2B01G122100.1 Wheat extracellular 40.36 47.12
TraesCS2B01G095600.1 Wheat extracellular 52.91 46.27
TraesCS2D01G078900.1 Wheat extracellular 52.47 46.06
TraesCS2A01G081200.1 Wheat extracellular 52.47 46.06
AT3G60570.1 Thale cress extracellular 54.26 45.83
TraesCSU01G009600.1 Wheat extracellular 51.57 45.45
TraesCS2D01G592900.1 Wheat extracellular 50.67 45.38
TraesCS2D01G104800.1 Wheat extracellular 51.57 45.28
TraesCS2B01G607400.1 Wheat extracellular 50.22 44.98
TraesCS2A01G580300.1 Wheat extracellular 50.22 44.98
TraesCS2D01G078800.1 Wheat extracellular 51.12 44.88
TraesCS2B01G095700.1 Wheat extracellular 50.67 44.84
TraesCS2A01G580200.1 Wheat extracellular 50.22 44.62
TraesCS2A01G080800.1 Wheat extracellular 50.67 44.49
EES07509 Sorghum extracellular 52.47 44.32
Zm00001d026170_P001 Maize extracellular 52.02 44.27
Zm00001d045861_P001 Maize mitochondrion 52.02 43.77
Solyc10g018500.1.1 Tomato extracellular 52.02 43.77
Os04t0552000-00 Rice extracellular 51.57 43.56
Zm00001d017493_P001 Maize extracellular 52.02 43.45
TraesCS2A01G105200.1 Wheat extracellular 49.33 43.31
PGSC0003DMT400030395 Potato cytosol, extracellular, mitochondrion, nucleus 25.11 43.08
HORVU0Hr1G016380.2 Barley extracellular 51.12 43.02
Zm00001d045792_P001 Maize extracellular 52.02 42.96
Os05t0246300-01 Rice extracellular 50.67 42.8
GSMUA_Achr2P13740_001 Banana extracellular 50.22 42.75
TraesCS2D01G078600.1 Wheat extracellular 45.74 42.68
EES11234 Sorghum extracellular 50.22 42.59
KXG19818 Sorghum extracellular 49.33 42.47
Zm00001d051368_P001 Maize extracellular 30.04 42.41
TraesCS2B01G432300.1 Wheat plastid 49.78 42.37
GSMUA_Achr2P13750_001 Banana extracellular 49.33 42.15
EER88254 Sorghum extracellular 48.88 42.08
TraesCS2A01G413600.1 Wheat extracellular 49.33 41.98
GSMUA_Achr2P13730_001 Banana extracellular 49.33 41.98
TraesCS6A01G249700.1 Wheat extracellular 49.78 41.73
TraesCS2D01G411000.1 Wheat extracellular 48.88 41.6
TraesCS6A01G249400.2 Wheat extracellular 49.33 41.51
TraesCS6D01G231400.1 Wheat extracellular 49.33 41.35
Os02t0658600-00 Rice plastid 50.22 41.03
AT1G65680.1 Thale cress extracellular 49.78 40.66
Solyc01g090820.1.1 Tomato extracellular 46.64 40.47
HORVU2Hr1G097480.1 Barley extracellular 49.33 38.87
Solyc05g052330.1.1 Tomato extracellular 46.64 38.81
Solyc07g049540.1.1 Tomato extracellular 44.39 38.52
HORVU2Hr1G013340.1 Barley extracellular 48.43 36.99
PGSC0003DMT400095086 Potato plastid 40.81 36.4
AT4G28250.1 Thale cress extracellular 42.6 35.98
AT2G20750.1 Thale cress extracellular 40.81 33.58
TraesCS5D01G384200.1 Wheat extracellular 46.19 33.44
TraesCS5B01G376500.1 Wheat extracellular 46.19 33.33
Os03t0645000-00 Rice mitochondrion 46.19 32.91
GSMUA_AchrUn_... Banana extracellular 25.56 31.67
EER93754 Sorghum extracellular 43.05 31.37
KXG37946 Sorghum extracellular 45.29 31.08
AT4G17030.1 Thale cress extracellular 29.6 26.4
HORVU5Hr1G092910.9 Barley plastid 46.64 25.12
AT4G38400.1 Thale cress extracellular 29.15 24.53
AT3G45960.2 Thale cress extracellular 28.7 24.33
AT3G45970.1 Thale cress extracellular 28.7 24.15
Zm00001d033231_P003 Maize extracellular 42.6 13.31
Protein Annotations
Gene3D:2.40.40.10Gene3D:2.60.40.760MapMan:35.1EntrezGene:6240766EMBL:AC007234ProteinID:AEE34411.1
ArrayExpress:AT1G65681EnsemblPlantsGene:AT1G65681RefSeq:AT1G65681TAIR:AT1G65681RefSeq:AT1G65681-TAIR-GEnsemblPlants:AT1G65681.1
TAIR:AT1G65681.1Unigene:At.73816Symbol:EXPB6InterPro:Expan_Lol_pIInterPro:Expansin/allergen_DPBB_domInterPro:Expansin_CBD
InterPro:Expansin_CBD_sfUniProt:F4IBJ3GO:GO:0000003GO:GO:0003674GO:GO:0005575GO:GO:0005576
GO:GO:0005618GO:GO:0005623GO:GO:0008150GO:GO:0016020GO:GO:0019953GO:GO:0030312
InterPro:IPR007112InterPro:IPR007117InterPro:IPR036749InterPro:IPR036908InterPro:LolPIRefSeq:NP_001117554.1
PFAM:PF01357PFAM:PF03330PRINTS:PR00829PRINTS:PR01225PFscan:PS50842PFscan:PS50843
PANTHER:PTHR31692PANTHER:PTHR31692:SF3InterPro:RlpA-like_DPBBInterPro:RlpA-like_sfSMART:SM00837SUPFAM:SSF49590
SUPFAM:SSF50685UniParc:UPI00017390AE::::
Description
EXPB6Expansin-B6 [Source:UniProtKB/Swiss-Prot;Acc:F4IBJ3]
Coordinates
chr1:+:24428875..24430670
Molecular Weight (calculated)
24014.7 Da
IEP (calculated)
7.240
GRAVY (calculated)
-0.080
Length
223 amino acids
Sequence
(BLAST)
001: MIGELDFPFL GAGSTGGACG FAVANPPLYG MVSAGGPSVF NNGIGCGTCF QILCNGHPAC SRRPITVTIT DECPGGPCAS EPAHFDLSGK AMGALARPGQ
101: GDRLRSAGVL RVYYRRVECL YRRTNIAFRM DPGANPYYIS FVVEYENGDG DLAYIEIQPA DGEFIPMQEM RSAVWKISSG SPLTGPFNIR LTSAESHKVV
201: LAYNVIPANW KPNETYRSVV NFK
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.