Factsheet for Os04t0552000-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0246300-01	Rice	extracellular	92.42	92.42
EES11234	Sorghum	extracellular	80.3	80.61
TraesCS2D01G411000.1	Wheat	extracellular	78.41	79.01
TraesCS2B01G432300.1	Wheat	plastid	78.41	79.01
Zm00001d026170_P001	Maize	extracellular	78.03	78.63
TraesCS2A01G413600.1	Wheat	extracellular	78.03	78.63
HORVU2Hr1G097480.1	Barley	extracellular	79.92	74.56
Os02t0658600-00	Rice	plastid	70.08	67.77
GSMUA_AchrUn_...	Banana	extracellular	61.74	61.74
Solyc01g090810.2.1	Tomato	extracellular	63.64	61.09
VIT_15s0021g02670.t01	Wine grape	extracellular	62.88	60.81
VIT_15s0021g02700.t01	Wine grape	extracellular	62.12	60.07
Os04t0552200-00	Rice	plasma membrane	61.36	58.91
PGSC0003DMT400048506	Potato	plastid	43.18	58.76
GSMUA_Achr4P26910_001	Banana	extracellular	60.23	58.46
CDY18948	Canola	extracellular	42.8	57.95
KRH33426	Soybean	extracellular	57.95	56.25
AT1G65680.1	Thale cress	extracellular	57.2	55.31
KRG88934	Soybean	extracellular, vacuole	57.95	55.23
KRH75302	Soybean	extracellular	57.95	55.23
CDY72655	Canola	cytosol, plastid	35.23	55.03
CDY18951	Canola	extracellular	56.82	54.55
Os02t0658800-01	Rice	extracellular	60.23	54.45
CDY18950	Canola	cytosol, extracellular, plastid	48.86	54.43
CDY72505	Canola	cytosol	32.95	54.38
KRH33423	Soybean	extracellular	56.82	54.15
CDY70406	Canola	extracellular	55.68	53.65
CDX74710	Canola	extracellular	55.3	53.28
CDY72345	Canola	cytosol	49.24	53.28
Bra004889.1-P	Field mustard	extracellular	55.3	53.09
Os03t0645000-00	Rice	mitochondrion	62.88	53.04
VIT_09s0002g08510.t01	Wine grape	extracellular	55.68	52.69
AT2G45110.1	Thale cress	extracellular	51.52	52.51
AT1G65681.1	Thale cress	cytosol	43.56	51.57
KRH65410	Soybean	extracellular	51.89	51.31
Bra000370.1-P	Field mustard	extracellular	50.0	50.97
CDX83404	Canola	extracellular	50.0	50.97
CDX74711	Canola	extracellular	50.38	50.96
Bra035987.1-P	Field mustard	extracellular	50.76	50.57
CDX96901	Canola	extracellular	50.76	50.57
CDY14888	Canola	extracellular	50.76	50.57
Solyc10g018500.1.1	Tomato	extracellular	50.38	50.19
Solyc03g093390.2.1	Tomato	extracellular, nucleus	53.79	49.82
Os10t0555900-02	Rice	extracellular	50.0	49.25
CDY18946	Canola	extracellular	49.62	49.25
PGSC0003DMT400030395	Potato	cytosol, extracellular, mitochondrion, nucleus	23.48	47.69
Os10t0555600-01	Rice	extracellular	49.62	47.64
Os03t0102500-01	Rice	extracellular	49.24	47.1
Solyc01g090820.1.1	Tomato	extracellular	45.83	47.08
Solyc05g052330.1.1	Tomato	extracellular	46.59	45.9
CDX95627	Canola	extracellular	48.11	45.52
Solyc07g049540.1.1	Tomato	extracellular	43.56	44.75
Bra004890.1-P	Field mustard	extracellular	53.79	44.65
Os10t0555700-02	Rice	extracellular	43.94	44.44
Os03t0102700-01	Rice	plastid	46.21	43.73
Os10t0548600-01	Rice	plasma membrane	44.32	43.49
PGSC0003DMT400095086	Potato	plastid	40.91	43.2
AT3G60570.1	Thale cress	extracellular	43.18	43.18
Os10t0556100-01	Rice	extracellular	45.83	42.31
Bra004891.1-P	Field mustard	cytosol, nucleus, plastid	21.97	42.03
Os03t0106800-01	Rice	plasma membrane	42.42	41.95
CDX74713	Canola	extracellular	54.17	41.69
CDX67835	Canola	extracellular	41.67	41.35
Bra003421.1-P	Field mustard	extracellular	41.67	41.35
CDY71186	Canola	extracellular	42.42	41.33
Os02t0639500-01	Rice	extracellular	40.53	41.0
Os03t0106500-01	Rice	plasma membrane	40.91	40.45
Os03t0106900-00	Rice	extracellular	40.91	40.45
Os03t0106700-00	Rice	extracellular	33.71	39.04
CDY48362	Canola	extracellular	45.45	33.61
Bra014484.1-P	Field mustard	extracellular	45.83	33.61
PGSC0003DMT400066943	Potato	cytosol, plastid, vacuole	56.06	32.24
Os07t0496250-01	Rice	extracellular	28.79	29.69
Os03t0132200-01	Rice	extracellular, plastid	29.55	27.96
Os07t0475400-01	Rice	extracellular	28.41	27.17
Os10t0542400-01	Rice	extracellular	27.65	26.55
Os04t0530100-01	Rice	extracellular, mitochondrion, vacuole	27.65	22.6
Os06t0725300-01	Rice	endoplasmic reticulum	21.97	18.53

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:35.1	EntrezGene:4336601	ProteinID:AAM73779.1	ProteinID:BAF15415.2
ProteinID:BAS90388.1	ProteinID:CAE01687.2	ProteinID:EAZ31563.1	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0019953	GO:GO:0030312
GO:GO:0071555	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	InterPro:LolPI
EnsemblPlantsGene:Os04g0552000	EnsemblPlants:Os04t0552000-00	PFAM:PF01357	PFAM:PF03330	PRINTS:PR00829	PRINTS:PR01225
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692	PANTHER:PTHR31692:SF52	UniProt:Q7XT40	InterPro:RlpA-like_DPBB
InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI00000ABA4B
RefSeq:XP_015634512.1	SEG:seg	:	:	:	:

Description

EXPB15Barwin-related endoglucanase domain containing protein. (Os04t0552000-00)

Coordinates

chr4:+:27645701..27647185

Molecular Weight (calculated)

27367.5 Da

IEP (calculated)

7.911

GRAVY (calculated)

0.142

Length

264 amino acids

Sequence
(BLAST)

001: MASRFQLILS TFVVIAAVTM LPRPCASIEF HRKLSSWSNG GATWYGAANG AGSDGGACGY QGAVFQAPFS SMIAAGSPSI YKSGLGCGSC YQVKCTGNSA
101: CSGNPVTVVL TDECPGGPCL SEPVHFDLSG TAFGAMANPG QADQLRAAGV LQIQYNRVPC NWGGVKLTFV VDVGSNPNYF AVLVKYENGD GDLSGVELMQ
201: TGAGAAWTQM QQSWGAVWKL NAGSALQAPF SIRLTSSSGK TLVASNVIPS GWKPGMSYIS TVNF

Best Arabidopsis Sequence Match ( AT1G65680.1 )
(BLAST)

001: MTILVVDRYY MLMNLLFALT CLLLNLTHCF SPKKFNISAA TTSDSDWSIA GSTWYGNPTG YGSDGGACGY GNAVAQPPFS KMVSAGGPSL FKSGKGCGAC
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF

Arabidopsis Description

EXPB2Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.