Factsheet for Os04t0552200-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

mitochondrion: 15069638
plasma membrane: 15069638

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0552000-00	Rice	extracellular	58.91	61.36
Os05t0246300-01	Rice	extracellular	58.18	60.61
TraesCS2D01G411200.1	Wheat	extracellular	55.64	58.62
TraesCS2B01G432100.1	Wheat	extracellular	55.64	58.62
TraesCS2A01G413400.1	Wheat	extracellular	55.64	58.62
Os02t0658600-00	Rice	plastid	57.82	58.24
Os02t0658800-01	Rice	extracellular	60.36	56.85
HORVU2Hr1G097510.1	Barley	extracellular, mitochondrion, plastid	56.0	55.4
Os03t0645000-00	Rice	mitochondrion	54.55	47.92
Os10t0555900-02	Rice	extracellular	45.82	47.01
Os10t0555700-02	Rice	extracellular	42.91	45.21
Os10t0555600-01	Rice	extracellular	45.09	45.09
Os03t0102500-01	Rice	extracellular	45.09	44.93
Os03t0102700-01	Rice	plastid	44.73	44.09
Os10t0548600-01	Rice	plasma membrane	41.45	42.38
Os10t0556100-01	Rice	extracellular	44.0	42.31
Os03t0106800-01	Rice	plasma membrane	39.64	40.82
Os03t0106500-01	Rice	plasma membrane	39.27	40.45
Os03t0106900-00	Rice	extracellular	39.27	40.45
Os03t0106700-00	Rice	extracellular	32.73	39.47
Os02t0639500-01	Rice	extracellular	37.09	39.08
Os07t0496250-01	Rice	extracellular	28.73	30.86
Os03t0132200-01	Rice	extracellular, plastid	27.64	27.24
Os07t0475400-01	Rice	extracellular	25.45	25.36
Os10t0542400-01	Rice	extracellular	25.09	25.09
Os04t0530100-01	Rice	extracellular, mitochondrion, vacuole	27.27	23.22
Os06t0725300-01	Rice	endoplasmic reticulum	24.0	21.09

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:35.1	EntrezGene:4336602	ProteinID:AAK84683.1	EMBL:AF261273
ProteinID:BAF15416.1	ProteinID:BAS90391.1	ProteinID:CAE01688.2	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0019953	GO:GO:0030312
GO:GO:0071555	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	InterPro:LolPI
EnsemblPlantsGene:Os04g0552200	EnsemblPlants:Os04t0552200-00	PFAM:PF01357	PFAM:PF03330	PRINTS:PR00829	PRINTS:PR01225
PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692	PANTHER:PTHR31692:SF22	UniProt:Q7XT39	InterPro:RlpA-like_DPBB
InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI000009E295	RefSeq:XP_015635052.1	:	:	:	:

Description

BETA-EXPANSIN 5Beta-expansin 5. (Os04t0552200-00)

Coordinates

chr4:+:27655668..27657079

Molecular Weight (calculated)

28719.3 Da

IEP (calculated)

9.864

GRAVY (calculated)

-0.065

Length

275 amino acids

Sequence
(BLAST)

001: MVSRGTFVFA VLVALPILSL PVSGYEQNYT AGRRSTMSLG RGYGWSSGGA TWYGGPQGDG SEGGACGYQS AVGQRPFSSM IAAGGPSLFK NGKGCGSCYQ
101: IKCTGNRACS GRPVTVVITD SCPGGVCLNE AAHFDMSGTA FGAMANRGMG DRLRSAGVLK IQYKRVPCRF AMNVAFKVDA GSNPYYLAIL VQYANGDGDL
201: AAVHIMEARG GGGWKAMQQS WGATWRLNSN TGKPLSPPFS IRLTSGSGKV LVANNVIPSG WQAGLTYRST VNYAA

Best Arabidopsis Sequence Match ( AT1G65680.1 )
(BLAST)

001: MTILVVDRYY MLMNLLFALT CLLLNLTHCF SPKKFNISAA TTSDSDWSIA GSTWYGNPTG YGSDGGACGY GNAVAQPPFS KMVSAGGPSL FKSGKGCGAC
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF

Arabidopsis Description

EXPB2Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.