Factsheet for Os03t0645000-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
extracellular 3
mitochondrion 3
vacuole 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 15069638

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G376500.1	Wheat	extracellular	76.68	77.67
TraesCS5D01G384200.1	Wheat	extracellular	75.72	76.95
EER93754	Sorghum	extracellular	66.45	67.97
Os04t0552000-00	Rice	extracellular	53.04	62.88
Os05t0246300-01	Rice	extracellular	52.08	61.74
KXG37946	Sorghum	extracellular	60.7	58.46
Os02t0658600-00	Rice	plastid	50.16	57.51
HORVU5Hr1G092910.9	Barley	plastid	75.08	56.76
Os04t0552200-00	Rice	plasma membrane	47.92	54.55
Solyc01g090810.2.1	Tomato	extracellular	47.92	54.55
VIT_15s0021g02670.t01	Wine grape	extracellular	46.65	53.48
GSMUA_AchrUn_...	Banana	extracellular	43.77	51.89
VIT_15s0021g02700.t01	Wine grape	extracellular	45.05	51.65
KRH75302	Soybean	extracellular	45.05	50.9
CDY72655	Canola	cytosol, plastid	27.48	50.89
KRG88934	Soybean	extracellular, vacuole	44.41	50.18
PGSC0003DMT400048506	Potato	plastid	30.99	50.0
CDY18950	Canola	cytosol, extracellular, plastid	37.06	48.95
Os02t0658800-01	Rice	extracellular	45.37	48.63
GSMUA_Achr4P26910_001	Banana	extracellular	42.17	48.53
CDY72505	Canola	cytosol	24.6	48.12
KRH33426	Soybean	extracellular	41.53	47.79
CDY18948	Canola	extracellular	29.39	47.18
CDY72345	Canola	cytosol	36.74	47.13
KRH33423	Soybean	extracellular	40.89	46.21
AT1G65681.1	Thale cress	cytosol	32.91	46.19
CDY70406	Canola	extracellular	39.62	45.26
AT2G45110.1	Thale cress	extracellular	37.38	45.17
VIT_09s0002g08510.t01	Wine grape	extracellular	40.26	45.16
CDX74710	Canola	extracellular	39.3	44.89
Bra004889.1-P	Field mustard	extracellular	39.3	44.73
CDY18951	Canola	extracellular	39.3	44.73
AT1G65680.1	Thale cress	extracellular	38.98	44.69
Bra035987.1-P	Field mustard	extracellular	37.7	44.53
CDY14888	Canola	extracellular	37.7	44.53
CDX74711	Canola	extracellular	37.06	44.44
CDX96901	Canola	extracellular	37.38	44.15
Os10t0555900-02	Rice	extracellular	37.7	44.03
CDX83404	Canola	extracellular	36.1	43.63
Bra000370.1-P	Field mustard	extracellular	36.1	43.63
CDY18946	Canola	extracellular	36.74	43.23
Os10t0555600-01	Rice	extracellular	37.7	42.91
KRH65410	Soybean	extracellular	36.42	42.7
Solyc10g018500.1.1	Tomato	extracellular	36.1	42.64
Os03t0102500-01	Rice	extracellular	37.06	42.03
Os10t0555700-02	Rice	extracellular	34.82	41.76
Solyc03g093390.2.1	Tomato	extracellular, nucleus	38.02	41.75
Os03t0102700-01	Rice	plastid	36.74	41.22
Solyc01g090820.1.1	Tomato	extracellular	33.55	40.86
PGSC0003DMT400030395	Potato	cytosol, extracellular, mitochondrion, nucleus	16.93	40.77
CDX95627	Canola	extracellular	35.78	40.14
Os10t0556100-01	Rice	extracellular	36.1	39.51
Os10t0548600-01	Rice	plasma membrane	33.87	39.41
Solyc05g052330.1.1	Tomato	extracellular	33.23	38.81
Os03t0106500-01	Rice	plasma membrane	32.91	38.58
Os03t0106900-00	Rice	extracellular	32.91	38.58
Os03t0106800-01	Rice	plasma membrane	32.59	38.2
Solyc07g049540.1.1	Tomato	extracellular	31.31	38.13
Bra004890.1-P	Field mustard	extracellular	38.02	37.42
Bra004891.1-P	Field mustard	cytosol, nucleus, plastid	16.29	36.96
CDY71186	Canola	extracellular	31.95	36.9
Bra003421.1-P	Field mustard	extracellular	31.31	36.84
CDX67835	Canola	extracellular	31.31	36.84
Os02t0639500-01	Rice	extracellular	30.67	36.78
AT3G60570.1	Thale cress	extracellular	30.99	36.74
Os03t0106700-00	Rice	extracellular	26.2	35.96
CDX74713	Canola	extracellular	38.02	34.69
PGSC0003DMT400095086	Potato	plastid	27.48	34.4
PGSC0003DMT400066943	Potato	cytosol, plastid, vacuole	44.41	30.28
Bra014484.1-P	Field mustard	extracellular	34.19	29.72
CDY48362	Canola	extracellular	33.87	29.69
Zm00001d033231_P003	Maize	extracellular	67.41	29.55
Os03t0132200-01	Rice	extracellular, plastid	23.96	26.88
Os07t0496250-01	Rice	extracellular	21.09	25.78
Os10t0542400-01	Rice	extracellular	22.36	25.45
Os07t0475400-01	Rice	extracellular	22.36	25.36
Os04t0530100-01	Rice	extracellular, mitochondrion, vacuole	22.68	21.98
Os06t0725300-01	Rice	endoplasmic reticulum	20.77	20.77

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:35.1	UniProt:A0A0P0W1J4	ProteinID:BAS85464.1	InterPro:Expan_Lol_pI
InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575	GO:GO:0005576
GO:GO:0005618	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0019953	GO:GO:0030312	GO:GO:0071555	InterPro:IPR007112	InterPro:IPR007117
InterPro:IPR036749	InterPro:IPR036908	InterPro:LolPI	EnsemblPlantsGene:Os03g0645000	EnsemblPlants:Os03t0645000-00	PFAM:PF01357
PFAM:PF03330	PRINTS:PR00829	PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692
PANTHER:PTHR31692:SF14	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000393903A	SEG:seg	:	:

Description

BETA-EXPANSIN 12Similar to Expansin-B12. (Os03t0645000-00)

Coordinates

chr3:+:24894987..24898072

Molecular Weight (calculated)

33284.6 Da

IEP (calculated)

4.610

GRAVY (calculated)

0.054

Length

313 amino acids

Sequence
(BLAST)

001: RWWWWIRSAC AWRPSSPIVL ASVFQPCTSI ELHRELSGWS NGIATWYGDP NGAGSEGGAC GYQYAVDQPP FSSRIAAGSP YIYDSGKGCG SCYRVVCAGN
101: EACSGIPVTV VITDQGPGGP CLEELVDGQC MNEAAHFDMS GTAFGAMARP GQADQLRGAG LLQIQYTRVE CEWTGVGLTF VVDSGSNPNY LALLVEYDDN
201: DSDLAAVDIM PIGAGASGSW IPMQQSWGAV WRLNSGSALQ GPFSVRLTFS SGQMFVASNA IPAGWNPGMA YQPGGVAMRV RGRNGGRRGY EAVGMLGGLC
301: HLLLLLLLML FEL

Best Arabidopsis Sequence Match ( AT1G65680.1 )
(BLAST)

001: MTILVVDRYY MLMNLLFALT CLLLNLTHCF SPKKFNISAA TTSDSDWSIA GSTWYGNPTG YGSDGGACGY GNAVAQPPFS KMVSAGGPSL FKSGKGCGAC
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF

Arabidopsis Description

EXPB2Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.