Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83404 | Canola | extracellular | 80.69 | 80.69 |
| Bra000370.1-P | Field mustard | extracellular | 80.69 | 80.69 |
| CDY72345 | Canola | cytosol | 74.13 | 78.69 |
| CDX74711 | Canola | extracellular | 78.76 | 78.16 |
| AT1G65681.1 | Thale cress | cytosol | 66.8 | 77.58 |
| CDY72505 | Canola | cytosol | 47.88 | 77.5 |
| CDX96901 | Canola | extracellular | 78.38 | 76.6 |
| CDY18950 | Canola | cytosol, extracellular, plastid | 69.88 | 76.37 |
| Bra035987.1-P | Field mustard | extracellular | 77.61 | 75.85 |
| CDY14888 | Canola | extracellular | 77.61 | 75.85 |
| CDY72655 | Canola | cytosol, plastid | 49.42 | 75.74 |
| CDY18946 | Canola | extracellular | 77.22 | 75.19 |
| CDX95627 | Canola | extracellular | 75.68 | 70.25 |
| Bra004891.1-P | Field mustard | cytosol, nucleus, plastid | 32.43 | 60.87 |
| TraesCSU01G009600.1 | Wheat | extracellular | 54.44 | 55.73 |
| HORVU2Hr1G013380.1 | Barley | cytosol, extracellular, mitochondrion | 50.97 | 55.7 |
| TraesCS2B01G095600.1 | Wheat | extracellular | 54.05 | 54.9 |
| TraesCS2A01G081200.1 | Wheat | extracellular | 53.67 | 54.72 |
| TraesCS2D01G078900.1 | Wheat | extracellular | 53.67 | 54.72 |
| HORVU2Hr1G013360.1 | Barley | extracellular | 52.9 | 54.58 |
| TraesCS2D01G078800.1 | Wheat | extracellular | 53.28 | 54.33 |
| Zm00001d051368_P001 | Maize | extracellular | 32.82 | 53.8 |
| TraesCS2D01G592900.1 | Wheat | extracellular | 51.35 | 53.41 |
| TraesCS2B01G607400.1 | Wheat | extracellular | 51.35 | 53.41 |
| TraesCS2B01G095700.1 | Wheat | extracellular | 51.35 | 52.78 |
| TraesCS2A01G080800.1 | Wheat | extracellular | 51.74 | 52.76 |
| TraesCS2A01G105200.1 | Wheat | extracellular | 51.74 | 52.76 |
| TraesCS2A01G580300.1 | Wheat | extracellular | 50.58 | 52.61 |
| TraesCS2D01G104800.1 | Wheat | extracellular | 51.35 | 52.36 |
| TraesCS2A01G580200.1 | Wheat | extracellular | 50.58 | 52.19 |
| HORVU0Hr1G016380.2 | Barley | extracellular | 52.9 | 51.7 |
| EES07509 | Sorghum | extracellular | 52.51 | 51.52 |
| AT3G60570.1 | Thale cress | extracellular | 52.51 | 51.52 |
| Os04t0552000-00 | Rice | extracellular | 52.51 | 51.52 |
| Zm00001d045861_P001 | Maize | mitochondrion | 52.12 | 50.94 |
| Zm00001d017493_P001 | Maize | extracellular | 52.51 | 50.94 |
| GSMUA_Achr2P13740_001 | Banana | extracellular | 51.35 | 50.76 |
| TraesCS2B01G432300.1 | Wheat | plastid | 50.97 | 50.38 |
| GSMUA_Achr2P13730_001 | Banana | extracellular | 50.97 | 50.38 |
| TraesCS2A01G413600.1 | Wheat | extracellular | 50.97 | 50.38 |
| Zm00001d026170_P001 | Maize | extracellular | 50.97 | 50.38 |
| TraesCS2B01G122100.1 | Wheat | extracellular | 37.07 | 50.26 |
| KXG19818 | Sorghum | extracellular | 50.19 | 50.19 |
| Solyc10g018500.1.1 | Tomato | extracellular | 51.35 | 50.19 |
| Zm00001d045792_P001 | Maize | extracellular | 52.12 | 50.0 |
| TraesCS6A01G249700.1 | Wheat | extracellular | 51.35 | 50.0 |
| TraesCS6A01G249400.2 | Wheat | extracellular | 50.97 | 49.81 |
| EES11234 | Sorghum | extracellular | 50.58 | 49.81 |
| EER88254 | Sorghum | extracellular | 49.81 | 49.81 |
| TraesCS6D01G231400.1 | Wheat | extracellular | 50.97 | 49.62 |
| TraesCS2D01G411000.1 | Wheat | extracellular | 50.19 | 49.62 |
| TraesCS2D01G078600.1 | Wheat | extracellular | 45.56 | 49.37 |
| Os05t0246300-01 | Rice | extracellular | 50.19 | 49.24 |
| Os02t0658600-00 | Rice | plastid | 51.74 | 49.08 |
| GSMUA_Achr2P13750_001 | Banana | extracellular | 49.42 | 49.04 |
| AT1G65680.1 | Thale cress | extracellular | 49.42 | 46.89 |
| Solyc01g090820.1.1 | Tomato | extracellular | 45.95 | 46.3 |
| HORVU2Hr1G097480.1 | Barley | extracellular | 50.58 | 46.29 |
| PGSC0003DMT400030395 | Potato | cytosol, extracellular, mitochondrion, nucleus | 23.17 | 46.15 |
| Solyc07g049540.1.1 | Tomato | extracellular | 44.4 | 44.75 |
| Solyc05g052330.1.1 | Tomato | extracellular | 45.56 | 44.03 |
| HORVU2Hr1G013340.1 | Barley | extracellular | 48.65 | 43.15 |
| GSMUA_AchrUn_... | Banana | extracellular | 28.57 | 41.11 |
| PGSC0003DMT400095086 | Potato | plastid | 39.38 | 40.8 |
| TraesCS5B01G376500.1 | Wheat | extracellular | 47.49 | 39.81 |
| TraesCS5D01G384200.1 | Wheat | extracellular | 47.1 | 39.61 |
| AT4G28250.1 | Thale cress | extracellular | 39.77 | 39.02 |
| KXG37946 | Sorghum | extracellular | 47.88 | 38.15 |
| EER93754 | Sorghum | extracellular | 44.79 | 37.91 |
| Os03t0645000-00 | Rice | mitochondrion | 45.17 | 37.38 |
| AT2G20750.1 | Thale cress | extracellular | 38.61 | 36.9 |
| HORVU5Hr1G092910.9 | Barley | plastid | 47.1 | 29.47 |
| AT4G17030.1 | Thale cress | extracellular | 28.19 | 29.2 |
| AT4G38400.1 | Thale cress | extracellular | 25.87 | 25.28 |
| AT3G45960.2 | Thale cress | extracellular | 25.48 | 25.1 |
| AT3G45970.1 | Thale cress | extracellular | 25.1 | 24.53 |
| Zm00001d033231_P003 | Maize | extracellular | 43.24 | 15.69 |
Protein Annotations
| Gene3D:2.40.40.10 | Gene3D:2.60.40.760 | MapMan:35.1 | EntrezGene:819118 | ProteinID:AEC10508.1 | ArrayExpress:AT2G45110 |
| EnsemblPlantsGene:AT2G45110 | RefSeq:AT2G45110 | TAIR:AT2G45110 | RefSeq:AT2G45110-TAIR-G | EnsemblPlants:AT2G45110.1 | TAIR:AT2G45110.1 |
| Symbol:ATEXPB4 | Unigene:At.36674 | EMBL:BT004056 | InterPro:Expan_Lol_pI | InterPro:Expansin/allergen_DPBB_dom | InterPro:Expansin_CBD |
| InterPro:Expansin_CBD_sf | GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005623 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0019953 | GO:GO:0030312 |
| GO:GO:0071555 | InterPro:IPR007112 | InterPro:IPR007117 | InterPro:IPR036749 | InterPro:IPR036908 | InterPro:LolPI |
| RefSeq:NP_182036.1 | PFAM:PF01357 | PFAM:PF03330 | PRINTS:PR00829 | PRINTS:PR01225 | PFscan:PS50842 |
| PFscan:PS50843 | PANTHER:PTHR31692 | PANTHER:PTHR31692:SF3 | UniProt:Q9SHD1 | InterPro:RlpA-like_DPBB | InterPro:RlpA-like_sf |
| SMART:SM00837 | SUPFAM:SSF49590 | SUPFAM:SSF50685 | SignalP:SignalP-noTM | UniParc:UPI000012A336 | SEG:seg |
Description
EXPB4Expansin-B4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHD1]
Coordinates
chr2:+:18599498..18601339
Molecular Weight (calculated)
27205.3 Da
IEP (calculated)
7.189
GRAVY (calculated)
0.041
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSQRYFAL LALFAVSLKF CYCQNETIDV AGSGTAGVTW YGEPFGAGST GGACGYGSAV ANPPLYAMVS AGGPSLFNNG KGCGTCYQVV CIGHPACSGS
101: PITVTITDEC PGGPCASEPV HIDLSGKAMG ALAKPGQADQ LRSAGVIRVN YKRAACLYRG TNIVFRMDAG ANPYYISFVV EYENGDGDLS NVEIQPAGGS
201: FISMQEMRSA VWKVNSGSAL RGPFNIRLTS GESHKVIVAY NVIPANWKPD ESYRSIVNF
101: PITVTITDEC PGGPCASEPV HIDLSGKAMG ALAKPGQADQ LRSAGVIRVN YKRAACLYRG TNIVFRMDAG ANPYYISFVV EYENGDGDLS NVEIQPAGGS
201: FISMQEMRSA VWKVNSGSAL RGPFNIRLTS GESHKVIVAY NVIPANWKPD ESYRSIVNF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.