Factsheet for Os10t0555600-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
golgi 5
plasma membrane 5
endoplasmic reticulum 5
vacuole 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 19038476
extracellular: 19253284
cytosol: 19685898
extracellular: 24083427

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 19253284 doi

ST Kim, YH Kang, Y Wang, J Wu, ZY Park, R Rakwal, GK Agrawal, SY Lee, KY Kang

Environmental Biotechnology National Core Research Center, Gyeongsang National University, Chinju, Korea.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0555900-02	Rice	extracellular	74.91	76.87
TraesCS1A01G212000.1	Wheat	extracellular	73.45	74.81
Os10t0556100-01	Rice	extracellular	74.18	71.33
Os10t0555700-02	Rice	extracellular	66.18	69.73
Os03t0102700-01	Rice	plastid	67.64	66.67
TraesCS1B01G225700.1	Wheat	extracellular	72.36	65.89
TraesCS1D01G215100.1	Wheat	plastid	66.91	65.02
Os03t0102500-01	Rice	extracellular	63.27	63.04
Os10t0548600-01	Rice	plasma membrane	53.45	54.65
Os03t0106800-01	Rice	plasma membrane	52.36	53.93
Os03t0106500-01	Rice	plasma membrane	48.73	50.19
Os03t0106900-00	Rice	extracellular	48.73	50.19
GSMUA_AchrUn_...	Banana	extracellular	16.73	50.0
Os04t0552000-00	Rice	extracellular	47.64	49.62
Os05t0246300-01	Rice	extracellular	46.91	48.86
Os02t0658600-00	Rice	plastid	47.64	47.99
Os02t0658800-01	Rice	extracellular	49.82	46.92
Os03t0106700-00	Rice	extracellular	38.55	46.49
Os04t0552200-00	Rice	plasma membrane	45.09	45.09
Os03t0645000-00	Rice	mitochondrion	42.91	37.7
Os02t0639500-01	Rice	extracellular	34.91	36.78
Os07t0496250-01	Rice	extracellular	26.18	28.12
Os03t0132200-01	Rice	extracellular, plastid	25.82	25.45
Os10t0542400-01	Rice	extracellular	24.73	24.73
Os07t0475400-01	Rice	extracellular	22.91	22.83
Os06t0725300-01	Rice	endoplasmic reticulum	24.36	21.41
Os04t0530100-01	Rice	extracellular, mitochondrion, vacuole	23.64	20.12

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:35.1	EntrezGene:4349347	ProteinID:AAK15442.1	ProteinID:AAP54967.1
EMBL:AF261274	EMBL:AK061498	EMBL:AK104197	EMBL:AK105799	ProteinID:BAF27186.1	ProteinID:BAT11992.1
InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575
GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0019953	GO:GO:0030312	GO:GO:0071555	InterPro:IPR007112	InterPro:IPR007117
InterPro:IPR036749	InterPro:IPR036908	InterPro:LolPI	EnsemblPlantsGene:Os10g0555600	EnsemblPlants:Os10t0555600-01	PFAM:PF01357
PFAM:PF03330	PRINTS:PR00829	PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692
PANTHER:PTHR31692:SF12	UniProt:Q7XCA7	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590
SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI000009D91F	RefSeq:XP_015614019.1	:	:

Description

BETA-EXPANSIN 6Beta-expansin precursor. (Os10t0555600-01)

Coordinates

chr10:-:21830158..21831694

Molecular Weight (calculated)

29885.3 Da

IEP (calculated)

7.728

GRAVY (calculated)

-0.225

Length

275 amino acids

Sequence
(BLAST)

001: MAARMGSKVA AILAILSVLV VHGSCKGHPV NYNVSDASAY GSGWLPARAT WYGAPTGAGP DDNGGACGFK NVNQYPFSSM TSCGNEPIFK DGKGCGSCYQ
101: IRCNKDPSCS GNIETVIITD MNYYPVARYH FDLSGTAFGA MAKPGLNDKL RHSGIIDIQF RRVPCNYPGL KINFHVEEGS NPVYFAVLVE YEDLDGDVVQ
201: VDLMESKSAY GGATGVWTPM RESWGSIWRL DSNHRLQAPF SLRIRSDSGK TLVANNVIPA NWSPNSNYRS IVQFS

Best Arabidopsis Sequence Match ( AT1G65680.1 )
(BLAST)

001: MTILVVDRYY MLMNLLFALT CLLLNLTHCF SPKKFNISAA TTSDSDWSIA GSTWYGNPTG YGSDGGACGY GNAVAQPPFS KMVSAGGPSL FKSGKGCGAC
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF

Arabidopsis Description

EXPB2Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.