Factsheet for VIT_12s0059g00190.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	extracellular	76.45	75.29
PGSC0003DMT400047177	Potato	extracellular	73.75	71.54
Solyc07g054170.2.1	Tomato	extracellular	73.36	71.16
GSMUA_Achr5P12080_001	Banana	extracellular	73.36	71.16
GSMUA_Achr1P00120_001	Banana	extracellular	72.2	70.3
CDY58728	Canola	extracellular	70.27	68.68
KRH26935	Soybean	extracellular	69.11	68.58
Bra024215.1-P	Field mustard	extracellular	69.88	68.3
CDY70556	Canola	extracellular	69.88	68.3
Solyc10g008440.2.1	Tomato	extracellular	68.73	67.94
Zm00001d017377_P001	Maize	extracellular	70.27	67.91
Os02t0639500-01	Rice	extracellular	68.34	67.82
AT4G28250.1	Thale cress	extracellular	69.11	67.8
PGSC0003DMT400055827	Potato	extracellular	68.34	67.56
TraesCS6D01G218500.1	Wheat	extracellular	69.88	67.54
TraesCS6A01G235800.1	Wheat	extracellular	69.5	67.42
CDY18990	Canola	extracellular	68.34	66.79
Bra026272.1-P	Field mustard	extracellular	68.34	66.79
HORVU6Hr1G060410.7	Barley	extracellular	69.11	66.79
TraesCS6B01G264400.1	Wheat	extracellular	69.11	66.79
KRH25552	Soybean	extracellular	68.73	66.67
KRH55988	Soybean	extracellular	68.73	66.67
EES05488	Sorghum	extracellular	70.27	66.67
KRH22402	Soybean	extracellular	63.71	63.95
CDY05789	Canola	extracellular	65.25	63.77
CDY31940	Canola	extracellular	64.86	63.4
Bra036499.1-P	Field mustard	extracellular	64.86	63.4
AT2G20750.1	Thale cress	extracellular	65.64	62.73
TraesCS2D01G369200.2	Wheat	extracellular	66.8	62.01
TraesCS2A01G373000.1	Wheat	extracellular	67.18	61.92
TraesCS2B01G390000.1	Wheat	extracellular	66.41	61.21
Zm00001d002860_P002	Maize	extracellular	67.18	57.05
VIT_15s0021g02670.t01	Wine grape	extracellular	44.79	42.49
VIT_15s0021g02700.t01	Wine grape	extracellular	44.79	42.49
VIT_09s0002g08510.t01	Wine grape	extracellular	44.4	41.22
Os04t0530100-01	Rice	extracellular, mitochondrion, vacuole	43.24	34.67
VIT_00s0309g00050.t01	Wine grape	extracellular	31.66	32.67
VIT_00s0309g00090.t01	Wine grape	extracellular	31.27	32.27
VIT_00s1455g00010.t01	Wine grape	extracellular	30.89	31.87
VIT_02s0012g00830.t01	Wine grape	extracellular	26.64	27.06
VIT_03s0038g03430.t01	Wine grape	extracellular	26.25	26.25

Protein Annotations

EntrezGene:100260198	wikigene:100260198	Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.3	ProteinID:CBI28767
ProteinID:CBI28767.3	UniProt:D7TE44	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf
EMBL:FN595765	GO:GO:0000003	GO:GO:0005575	GO:GO:0005576	GO:GO:0006949	GO:GO:0008150
GO:GO:0009506	GO:GO:0009653	GO:GO:0009987	GO:GO:0019953	InterPro:IPR007112	InterPro:IPR007117
InterPro:IPR036749	InterPro:IPR036908	EntrezGene:LOC100260198	wikigene:LOC100260198	InterPro:LolPI	PFAM:PF01357
PFAM:PF03330	PRINTS:PR00829	PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692
PANTHER:PTHR31692:SF5	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685
SignalP:SignalP-noTM	TIGR:TC55336	UniParc:UPI0001BE33CA	ArrayExpress:VIT_12s0059g00190	EnsemblPlantsGene:VIT_12s0059g00190	EnsemblPlants:VIT_12s0059g00190.t01
RefSeq:XP_002267127	RefSeq:XP_002267127.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:5089057..5091513

Molecular Weight (calculated)

28058.4 Da

IEP (calculated)

8.328

GRAVY (calculated)

-0.080

Length

259 amino acids

Sequence
(BLAST)

001: MRVLGIGFFW VVVEGLLLVS GQLQHSLSNA HWHSATATWY GSPDGDGSDG GACGYGSLVD VKPFRARVGA VSPVLFKGGV GCGACYKVKC LDHNICSRRA
101: VTIIVTDECP GGYCSGGRTH FDLSGAAFGR MAVAGNNNQL RDRGEISVIF RRTPCKYPGK NIAFHVNEGS TDYWLSLLVE FEDGDGDVGS MHIREASSTE
201: WLEMRHVWGA SWCITGGPLK GPFSVKLTTL STGRTLSARE VIPRNWAPKA TYTSRLNFF

Best Arabidopsis Sequence Match ( AT4G28250.1 )
(BLAST)

001: MQLFPVMLAT LCIVLQLLIG SSALATTNRH VSNSHWLPAV ATWYGSPNGD GSDGGACGYG TLVDVKPLHA RVGAVNPILF KNGEGCGACY KVRCLDKSIC
101: SRRAVTVIIT DECPGCSKTS THFDLSGAVF GRLAIAGESG PLRNRGLIPV IYRRTACKYR GKNIAFHVNE GSTDFWLSLL VEFEDGEGDI GSMHIRQAGA
201: REWLEMKHVW GANWCIIGGP LKGPFSIKLT TLSAGKTLSA TDVVPRNWAP KATYSSRLNF SPVL

Arabidopsis Description

EXPB3EXPB3 [Source:UniProtKB/TrEMBL;Acc:A0A178USU9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.