Factsheet for VIT_00s0309g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0309g00050.t01	Wine grape	extracellular	96.02	96.02
VIT_00s1455g00010.t01	Wine grape	extracellular	90.44	90.44
KRH57515	Soybean	extracellular	57.77	57.77
KRH04222	Soybean	extracellular	57.37	57.37
Solyc08g077900.2.1	Tomato	extracellular	57.37	56.92
PGSC0003DMT400067456	Potato	extracellular	56.57	56.13
KRH28194	Soybean	extracellular	54.98	54.98
KRH77296	Soybean	extracellular	54.58	54.58
KRH04215	Soybean	nucleus	52.59	52.8
KRH04218	Soybean	extracellular	52.59	52.8
KRH04221	Soybean	extracellular	51.0	51.82
KRH57508	Soybean	endoplasmic reticulum	50.2	51.64
Bra012684.1-P	Field mustard	extracellular	51.39	51.6
CDY65447	Canola	extracellular	51.39	51.6
CDY09659	Canola	plasma membrane	51.39	51.6
Bra012687.1-P	Field mustard	extracellular	51.39	51.6
KRH57512	Soybean	extracellular	50.6	51.42
KRH04220	Soybean	endoplasmic reticulum	50.6	51.21
AT4G17030.1	Thale cress	extracellular	51.0	51.2
Bra040107.1-P	Field mustard	extracellular	50.2	50.4
CDY42954	Canola	extracellular	49.8	50.0
CDY35606	Canola	extracellular	49.8	50.0
PGSC0003DMT400067458	Potato	extracellular	49.4	49.4
CDX90493	Canola	cytosol, extracellular, nucleus	25.5	48.85
Solyc06g060970.1.1	Tomato	extracellular	46.61	47.18
VIT_02s0012g00830.t01	Wine grape	extracellular	47.81	47.06
Solyc08g077910.2.1	Tomato	extracellular	46.61	46.61
PGSC0003DMT400067459	Potato	extracellular	46.61	46.61
PGSC0003DMT400068379	Potato	mitochondrion	41.43	46.22
VIT_03s0038g03430.t01	Wine grape	extracellular	35.46	34.36
VIT_12s0059g00190.t01	Wine grape	extracellular	32.27	31.27
VIT_15s0021g02670.t01	Wine grape	extracellular	33.86	31.14
VIT_15s0021g02700.t01	Wine grape	extracellular	32.27	29.67
VIT_09s0002g08510.t01	Wine grape	extracellular	32.27	29.03

Protein Annotations

EntrezGene:100245245	wikigene:100245245	Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.4	EMBL:AM448328
ProteinID:CAN78704	ProteinID:CAN78704.1	ProteinID:CBI29509	ProteinID:CBI29509.3	UniProt:D7TG86	InterPro:Expan_Lol_pI
InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	EMBL:FN595791	GO:GO:0005575	GO:GO:0005576
InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	EntrezGene:LOC100245245	wikigene:LOC100245245
PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692
PANTHER:PTHR31692:SF10	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM
UniParc:UPI0001BE300E	ArrayExpress:VIT_00s0309g00090	EnsemblPlantsGene:VIT_00s0309g00090	EnsemblPlants:VIT_00s0309g00090.t01	RefSeq:XP_002269095.2	SEG:seg

Description

No Description!

Coordinates

chrUn:-:22639623..22641177

Molecular Weight (calculated)

27748.3 Da

IEP (calculated)

8.329

GRAVY (calculated)

-0.106

Length

251 amino acids

Sequence
(BLAST)

001: MGFPLSHYCC FLCVIVLLPV LCKCEDTFTY SRATYYGTSD GLGTPTGACG FGEYGRNVNG GNVGAVSRLY RDGTGCGACY QVRCKIPKLC ADVGMKVVVT
101: DHGGGDDTDF ILSRHGFSML ARPNKAADLF AYGVVGIEYR RVPCQYPGSN IFFKVHENSR FPDYLALVML YQAGLSDITA VDIWQEDSQA WKGMRKSYGA
201: VWDMANPPKG PVSLRFQVSG RRGQKWVQLM NVIPSHWKAG VAYDSKFQLD Y

Best Arabidopsis Sequence Match ( AT4G17030.1 )
(BLAST)

001: MKHSHVLLLL FVQVIVLLPL LCLSDDFVNS RATYYGSPDC KANPRGHCGY GEFGRDINNG EVSGVSWRLW NNGTGCGACY QVRCKIPPHC SEEGVYVVAT
101: DSGEGDGTDF ILSPKAYGRM ARPGTENQLY SFGVVNVEYQ RIPCRYAGYN LVYKIHEKSY NPHYLAILVL YVGGVNDILA VEVWQEDCKE WRRMRRVFGA
201: VHDLQNPPRG TLTLRFLVYG SAGINWIQSP NAIPADWTAG ATYDSNILLT

Arabidopsis Description

EXLB1Expansin-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WRS3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.