Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040107.1-P | Field mustard | extracellular | 99.6 | 99.6 |
| CDY42954 | Canola | extracellular | 98.8 | 98.8 |
| CDY65447 | Canola | extracellular | 90.8 | 90.8 |
| AT4G17030.1 | Thale cress | extracellular | 89.6 | 89.6 |
| CDX90493 | Canola | cytosol, extracellular, nucleus | 46.8 | 89.31 |
| CDY09659 | Canola | plasma membrane | 88.4 | 88.4 |
| KRH77296 | Soybean | extracellular | 60.4 | 60.16 |
| KRH04222 | Soybean | extracellular | 59.6 | 59.36 |
| KRH28194 | Soybean | extracellular | 59.2 | 58.96 |
| KRH57515 | Soybean | extracellular | 58.0 | 57.77 |
| VIT_00s1455g00010.t01 | Wine grape | extracellular | 53.2 | 52.99 |
| PGSC0003DMT400067456 | Potato | extracellular | 52.0 | 51.38 |
| Solyc08g077900.2.1 | Tomato | extracellular | 52.0 | 51.38 |
| VIT_00s0309g00050.t01 | Wine grape | extracellular | 50.8 | 50.6 |
| VIT_00s0309g00090.t01 | Wine grape | extracellular | 50.0 | 49.8 |
| KRH04218 | Soybean | extracellular | 49.6 | 49.6 |
| KRH04215 | Soybean | nucleus | 49.6 | 49.6 |
| PGSC0003DMT400068379 | Potato | mitochondrion | 43.6 | 48.44 |
| Solyc06g060970.1.1 | Tomato | extracellular | 48.0 | 48.39 |
| KRH57508 | Soybean | endoplasmic reticulum | 46.8 | 47.95 |
| KRH04220 | Soybean | endoplasmic reticulum | 46.4 | 46.77 |
| KRH04221 | Soybean | extracellular | 44.4 | 44.94 |
| PGSC0003DMT400067458 | Potato | extracellular | 44.8 | 44.62 |
| KRH57512 | Soybean | extracellular | 44.0 | 44.53 |
| PGSC0003DMT400067459 | Potato | extracellular | 42.8 | 42.63 |
| Solyc08g077910.2.1 | Tomato | extracellular | 42.4 | 42.23 |
| CDY69288 | Canola | extracellular | 34.0 | 32.2 |
| CDY61895 | Canola | extracellular | 34.4 | 31.97 |
| CDY52801 | Canola | extracellular | 34.4 | 31.97 |
| CDY64278 | Canola | extracellular | 33.6 | 31.7 |
| CDY72634 | Canola | extracellular | 33.6 | 31.7 |
| CDY18948 | Canola | extracellular | 24.4 | 31.28 |
| CDY18951 | Canola | extracellular | 34.0 | 30.91 |
| CDY70406 | Canola | extracellular | 33.6 | 30.66 |
| CDX74710 | Canola | extracellular | 33.2 | 30.29 |
| CDY72345 | Canola | cytosol | 28.8 | 29.51 |
| CDX74711 | Canola | extracellular | 29.6 | 28.35 |
| CDY18990 | Canola | extracellular | 30.0 | 28.3 |
| CDY70556 | Canola | extracellular | 29.6 | 27.92 |
| CDY05789 | Canola | extracellular | 29.6 | 27.92 |
| CDY18950 | Canola | cytosol, extracellular, plastid | 26.4 | 27.85 |
| CDX83404 | Canola | extracellular | 28.8 | 27.8 |
| CDY58728 | Canola | extracellular | 29.2 | 27.55 |
| CDY31940 | Canola | extracellular | 29.2 | 27.55 |
| CDY18946 | Canola | extracellular | 28.8 | 27.07 |
| CDY14888 | Canola | extracellular | 28.4 | 26.79 |
| CDX96901 | Canola | extracellular | 27.6 | 26.04 |
| CDY72655 | Canola | cytosol, plastid | 17.2 | 25.44 |
| CDX74713 | Canola | extracellular | 32.8 | 23.91 |
| CDY72505 | Canola | cytosol | 15.2 | 23.75 |
| CDX95627 | Canola | extracellular | 26.4 | 23.66 |
| CDY71186 | Canola | extracellular | 24.8 | 22.88 |
| CDX67835 | Canola | extracellular | 24.0 | 22.56 |
| CDY48362 | Canola | extracellular | 24.0 | 16.81 |
Protein Annotations
| Gene3D:2.40.40.10 | Gene3D:2.60.40.760 | MapMan:21.4.2.4 | GO:A0A078HD18 | UniProt:A0A078HD18 | EnsemblPlants:CDY35606 |
| ProteinID:CDY35606 | ProteinID:CDY35606.1 | InterPro:Expan_Lol_pI | InterPro:Expansin/allergen_DPBB_dom | InterPro:Expansin_CBD | InterPro:Expansin_CBD_sf |
| GO:GO:0000003 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0008150 | GO:GO:0019953 | EnsemblPlantsGene:GSBRNA2T00058962001 |
| InterPro:IPR007112 | InterPro:IPR007117 | InterPro:IPR036749 | InterPro:IPR036908 | InterPro:LolPI | PFAM:PF01357 |
| PFAM:PF03330 | PRINTS:PR00829 | PRINTS:PR01225 | PFscan:PS50842 | PFscan:PS50843 | PANTHER:PTHR31692 |
| PANTHER:PTHR31692:SF10 | InterPro:RlpA-like_DPBB | InterPro:RlpA-like_sf | SMART:SM00837 | SUPFAM:SSF49590 | SUPFAM:SSF50685 |
| SignalP:SignalP-noTM | UniParc:UPI0004EB20FD | SEG:seg | : | : | : |
Description
BnaC01g21280DBnaC01g21280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HD18]
Coordinates
chrLK032356:+:136691..138378
Molecular Weight (calculated)
27856.1 Da
IEP (calculated)
6.756
GRAVY (calculated)
-0.187
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTFNVLHLL LVQVIVLLPL LCLSDDFVSS RATYYGSPDC KGNPRGACGY GEFGRDINNG EVSGVSSRLW NNGTGCGACY QVRCKIPPHC NEEGVYVVAT
101: DYGEGHGTDF VFSPKAYGRM ARPGTEDQLY SFGVVDVEYQ RVPCKYDGYN LVYKVHEKSY NPHYLAVLIL YVGGVNDILA VEAWQEDCKE WRRMRRVFGT
201: VHDLQNPPRG TLTLRFLVYG SAGINWIQSP NALPADWTAG ATYNSNILLT
101: DYGEGHGTDF VFSPKAYGRM ARPGTEDQLY SFGVVDVEYQ RVPCKYDGYN LVYKVHEKSY NPHYLAVLIL YVGGVNDILA VEAWQEDCKE WRRMRRVFGT
201: VHDLQNPPRG TLTLRFLVYG SAGINWIQSP NALPADWTAG ATYNSNILLT
001: MKHSHVLLLL FVQVIVLLPL LCLSDDFVNS RATYYGSPDC KANPRGHCGY GEFGRDINNG EVSGVSWRLW NNGTGCGACY QVRCKIPPHC SEEGVYVVAT
101: DSGEGDGTDF ILSPKAYGRM ARPGTENQLY SFGVVNVEYQ RIPCRYAGYN LVYKIHEKSY NPHYLAILVL YVGGVNDILA VEVWQEDCKE WRRMRRVFGA
201: VHDLQNPPRG TLTLRFLVYG SAGINWIQSP NAIPADWTAG ATYDSNILLT
101: DSGEGDGTDF ILSPKAYGRM ARPGTENQLY SFGVVNVEYQ RIPCRYAGYN LVYKIHEKSY NPHYLAILVL YVGGVNDILA VEVWQEDCKE WRRMRRVFGA
201: VHDLQNPPRG TLTLRFLVYG SAGINWIQSP NAIPADWTAG ATYDSNILLT
Arabidopsis Description
EXLB1Expansin-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WRS3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.