Factsheet for Bra026272.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18990	Canola	extracellular	98.87	98.87
AT4G28250.1	Thale cress	extracellular	91.7	92.05
Bra024215.1-P	Field mustard	extracellular	91.32	91.32
Bra036499.1-P	Field mustard	extracellular	72.83	72.83
KRH26935	Soybean	extracellular	69.43	70.5
KRH55988	Soybean	extracellular	69.06	68.54
VIT_12s0059g00190.t01	Wine grape	extracellular	66.79	68.34
KRH25552	Soybean	extracellular	68.68	68.16
GSMUA_AchrUn_...	Banana	extracellular	67.55	68.06
KRH22402	Soybean	extracellular	65.28	67.05
TraesCS6A01G235800.1	Wheat	extracellular	66.42	65.92
Os02t0639500-01	Rice	extracellular	64.53	65.52
TraesCS6D01G218500.1	Wheat	extracellular	66.04	65.3
TraesCS6B01G264400.1	Wheat	extracellular	65.66	64.93
GSMUA_Achr1P00120_001	Banana	extracellular	64.91	64.66
Zm00001d017377_P001	Maize	extracellular	65.28	64.55
Solyc07g054170.2.1	Tomato	extracellular	64.91	64.42
HORVU6Hr1G060410.7	Barley	extracellular	64.91	64.18
GSMUA_Achr5P12080_001	Banana	extracellular	64.53	64.04
PGSC0003DMT400055827	Potato	extracellular	63.02	63.74
EES05488	Sorghum	extracellular	65.66	63.74
TraesCS2B01G390000.1	Wheat	extracellular	67.55	63.7
PGSC0003DMT400047177	Potato	extracellular	64.15	63.67
TraesCS2D01G369200.2	Wheat	extracellular	66.79	63.44
TraesCS2A01G373000.1	Wheat	extracellular	67.17	63.35
Solyc10g008440.2.1	Tomato	extracellular	62.26	62.98
Zm00001d002860_P002	Maize	extracellular	67.17	58.36
Bra000370.1-P	Field mustard	extracellular	41.89	42.86
Bra004889.1-P	Field mustard	extracellular	43.4	41.82
Bra003421.1-P	Field mustard	extracellular	38.49	38.35
Bra035987.1-P	Field mustard	extracellular	38.11	38.11
Bra004891.1-P	Field mustard	cytosol, nucleus, plastid	19.25	36.96
Bra004890.1-P	Field mustard	extracellular	39.25	32.7
Os04t0530100-01	Rice	extracellular, mitochondrion, vacuole	38.11	31.27
Bra012684.1-P	Field mustard	extracellular	28.68	30.4
Bra012687.1-P	Field mustard	extracellular	28.68	30.4
Bra040107.1-P	Field mustard	extracellular	28.68	30.4
Bra014484.1-P	Field mustard	extracellular	36.98	27.22
Bra033563.1-P	Field mustard	extracellular	26.04	26.14
Bra011899.1-P	Field mustard	extracellular	25.28	24.91

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.3	EnsemblPlantsGene:Bra026272	EnsemblPlants:Bra026272.1	EnsemblPlants:Bra026272.1-P
InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575
GO:GO:0005576	GO:GO:0008150	GO:GO:0019953	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	InterPro:LolPI	UniProt:M4EBW3	PFAM:PF01357	PFAM:PF03330	PRINTS:PR00829
PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692	PANTHER:PTHR31692:SF5	InterPro:RlpA-like_DPBB
InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI0002543F3E
SEG:seg	:	:	:	:	:

Description

AT4G28250 (E=2e-131) ATEXPB3, EXPB3, ATHEXP BETA 1.6 | ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)

Coordinates

chrA01:-:10266053..10267456

Molecular Weight (calculated)

28433.2 Da

IEP (calculated)

8.854

GRAVY (calculated)

0.034

Length

265 amino acids

Sequence
(BLAST)

001: MQLSLAIILA TLCIFLRLLN SSSAPVTTNS HASKSHWLPA VATWYGSANG DGSDGGACGY GTLVDVKPLH ARVGAVNPIL FKNGEGCGAC YKVRCLDRSI
101: CSRRAVTVII TDECPGCSKT NTHFDLSGAA FGRLAISGES GPLRNRGLIP VIYRRTACKY RGKNIAFHVN EGSTDFWLSL LVEFEDGEGD IGSMHIRQAG
201: ASEWLEMKHV WGANWCIVGG PLKGPFSIKL TTLSAGKTLS ATDVVPRNWA PKATYTSRLN FSPVL

Best Arabidopsis Sequence Match ( AT4G28250.1 )
(BLAST)

001: MQLFPVMLAT LCIVLQLLIG SSALATTNRH VSNSHWLPAV ATWYGSPNGD GSDGGACGYG TLVDVKPLHA RVGAVNPILF KNGEGCGACY KVRCLDKSIC
101: SRRAVTVIIT DECPGCSKTS THFDLSGAVF GRLAIAGESG PLRNRGLIPV IYRRTACKYR GKNIAFHVNE GSTDFWLSLL VEFEDGEGDI GSMHIRQAGA
201: REWLEMKHVW GANWCIIGGP LKGPFSIKLT TLSAGKTLSA TDVVPRNWAP KATYSSRLNF SPVL

Arabidopsis Description

EXPB3EXPB3 [Source:UniProtKB/TrEMBL;Acc:A0A178USU9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.