Factsheet for GSMUA_Achr1P00120_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P12080_001	Banana	extracellular	82.33	82.02
GSMUA_AchrUn_...	Banana	extracellular	80.08	80.99
VIT_12s0059g00190.t01	Wine grape	extracellular	70.3	72.2
Os02t0639500-01	Rice	extracellular	70.3	71.65
TraesCS6D01G218500.1	Wheat	extracellular	71.05	70.52
TraesCS6A01G235800.1	Wheat	extracellular	70.3	70.04
Zm00001d017377_P001	Maize	extracellular	69.92	69.4
TraesCS6B01G264400.1	Wheat	extracellular	69.92	69.4
HORVU6Hr1G060410.7	Barley	extracellular	69.17	68.66
Solyc07g054170.2.1	Tomato	extracellular	68.42	68.16
PGSC0003DMT400047177	Potato	extracellular	68.05	67.79
EES05488	Sorghum	extracellular	68.05	66.3
KRH26935	Soybean	extracellular	65.04	66.28
AT4G28250.1	Thale cress	extracellular	65.04	65.53
Solyc10g008440.2.1	Tomato	extracellular	64.29	65.27
Bra026272.1-P	Field mustard	extracellular	64.66	64.91
CDY18990	Canola	extracellular	64.66	64.91
CDY58728	Canola	extracellular	64.66	64.91
KRH25552	Soybean	extracellular	65.04	64.79
Bra024215.1-P	Field mustard	extracellular	64.29	64.53
CDY70556	Canola	extracellular	64.29	64.53
PGSC0003DMT400055827	Potato	extracellular	63.53	64.5
KRH55988	Soybean	extracellular	64.66	64.42
TraesCS2D01G369200.2	Wheat	extracellular	67.29	64.16
TraesCS2B01G390000.1	Wheat	extracellular	67.29	63.7
TraesCS2A01G373000.1	Wheat	extracellular	67.29	63.7
KRH22402	Soybean	extracellular	61.28	63.18
CDY05789	Canola	extracellular	61.28	61.51
CDY31940	Canola	extracellular	60.9	61.13
Bra036499.1-P	Field mustard	extracellular	60.9	61.13
Zm00001d002860_P002	Maize	extracellular	69.92	60.98
AT2G20750.1	Thale cress	extracellular	61.65	60.52
GSMUA_Achr2P13750_001	Banana	extracellular	42.11	42.91
GSMUA_Achr2P13730_001	Banana	extracellular	41.35	41.98
GSMUA_Achr2P13740_001	Banana	extracellular	41.35	41.98
GSMUA_Achr2P11930_001	Banana	extracellular	25.56	41.72
GSMUA_AchrUn_...	Banana	extracellular	40.98	41.29
GSMUA_Achr4P26910_001	Banana	extracellular	41.73	40.81
GSMUA_Achr7P07040_001	Banana	extracellular	42.48	40.21
GSMUA_AchrUn_...	Banana	extracellular	25.56	37.78
GSMUA_AchrUn_...	Banana	extracellular	12.41	35.87
Os04t0530100-01	Rice	extracellular, mitochondrion, vacuole	40.98	33.75
GSMUA_AchrUn_...	Banana	extracellular	19.55	27.66
GSMUA_AchrUn_...	Banana	extracellular	26.32	27.56
GSMUA_Achr11P...	Banana	extracellular	25.19	26.38
GSMUA_Achr5P11590_001	Banana	extracellular	25.56	26.05
GSMUA_Achr11P...	Banana	extracellular	25.19	25.19
GSMUA_Achr5P19030_001	Banana	extracellular	24.44	24.62
GSMUA_Achr11P...	Banana	extracellular	23.68	23.77
GSMUA_Achr1P02170_001	Banana	extracellular, peroxisome, plastid	26.69	23.13
GSMUA_Achr5P12710_001	Banana	extracellular, nucleus, plasma membrane	23.31	19.44

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.3	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0019953
EnsemblPlantsGene:GSMUA_Achr1G00120_001	EnsemblPlants:GSMUA_Achr1P00120_001	EnsemblPlants:GSMUA_Achr1T00120_001	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	InterPro:LolPI	UniProt:M0RVS0	PFAM:PF01357	PFAM:PF03330	PRINTS:PR00829
PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692	PANTHER:PTHR31692:SF5	InterPro:RlpA-like_DPBB
InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI0002950238
SEG:seg	:	:	:	:	:

Description

Expansin-B16 [Source:GMGC_GENE;Acc:GSMUA_Achr1G00120_001]

Coordinates

chr1:+:99361..101127

Molecular Weight (calculated)

29246.0 Da

IEP (calculated)

8.352

GRAVY (calculated)

-0.055

Length

266 amino acids

Sequence
(BLAST)

001: MASCFFSPFS FYYSFLLLSV FALFCFDTSE PHPVVDPHWH PATATWYGSP NGDGSDGGAC GYGSLVDVRP LRARVGAVSP VLFKGGEGCG ACYKVRCLDP
101: VVCARRPVTV IVTDECPGGY CAFGRTHFDL SGAAFGRMAV PGKASRLRDR GEMPVVFRRT PCKYPGKSIA FHVNEGSTNF WLSLLVEFED DDGDIGSMHI
201: KQANSVEWLE MKHIWGANWC IIGGPLHGPF SVKLATLTTR KTFSARDVIP RNWSPKATYT SRLNLR

Best Arabidopsis Sequence Match ( AT4G28250.1 )
(BLAST)

001: MQLFPVMLAT LCIVLQLLIG SSALATTNRH VSNSHWLPAV ATWYGSPNGD GSDGGACGYG TLVDVKPLHA RVGAVNPILF KNGEGCGACY KVRCLDKSIC
101: SRRAVTVIIT DECPGCSKTS THFDLSGAVF GRLAIAGESG PLRNRGLIPV IYRRTACKYR GKNIAFHVNE GSTDFWLSLL VEFEDGEGDI GSMHIRQAGA
201: REWLEMKHVW GANWCIIGGP LKGPFSIKLT TLSAGKTLSA TDVVPRNWAP KATYSSRLNF SPVL

Arabidopsis Description

EXPB3EXPB3 [Source:UniProtKB/TrEMBL;Acc:A0A178USU9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.