Factsheet for Bra024215.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70556	Canola	extracellular	100.0	100.0
CDY58728	Canola	extracellular	99.62	99.62
Bra026272.1-P	Field mustard	extracellular	91.32	91.32
AT4G28250.1	Thale cress	extracellular	90.57	90.91
Bra036499.1-P	Field mustard	extracellular	73.58	73.58
VIT_12s0059g00190.t01	Wine grape	extracellular	68.3	69.88
KRH55988	Soybean	extracellular	69.43	68.91
GSMUA_AchrUn_...	Banana	extracellular	68.3	68.82
KRH25552	Soybean	extracellular	69.06	68.54
KRH26935	Soybean	extracellular	66.42	67.43
Os02t0639500-01	Rice	extracellular	64.53	65.52
TraesCS6A01G235800.1	Wheat	extracellular	65.66	65.17
TraesCS6D01G218500.1	Wheat	extracellular	65.66	64.93
Solyc07g054170.2.1	Tomato	extracellular	65.28	64.79
KRH22402	Soybean	extracellular	63.02	64.73
PGSC0003DMT400047177	Potato	extracellular	64.91	64.42
GSMUA_Achr1P00120_001	Banana	extracellular	64.53	64.29
Zm00001d017377_P001	Maize	extracellular	64.91	64.18
TraesCS6B01G264400.1	Wheat	extracellular	64.91	64.18
PGSC0003DMT400055827	Potato	extracellular	63.02	63.74
EES05488	Sorghum	extracellular	65.66	63.74
HORVU6Hr1G060410.7	Barley	extracellular	64.15	63.43
Solyc10g008440.2.1	Tomato	extracellular	62.26	62.98
GSMUA_Achr5P12080_001	Banana	extracellular	63.4	62.92
TraesCS2D01G369200.2	Wheat	extracellular	65.28	62.01
TraesCS2B01G390000.1	Wheat	extracellular	65.66	61.92
TraesCS2A01G373000.1	Wheat	extracellular	65.28	61.57
Zm00001d002860_P002	Maize	extracellular	66.04	57.38
Bra000370.1-P	Field mustard	extracellular	39.25	40.15
Bra004889.1-P	Field mustard	extracellular	41.13	39.64
Bra035987.1-P	Field mustard	extracellular	37.74	37.74
Bra003421.1-P	Field mustard	extracellular	37.36	37.22
Bra004891.1-P	Field mustard	cytosol, nucleus, plastid	17.74	34.06
Bra004890.1-P	Field mustard	extracellular	37.74	31.45
Os04t0530100-01	Rice	extracellular, mitochondrion, vacuole	37.74	30.96
Bra012687.1-P	Field mustard	extracellular	28.68	30.4
Bra012684.1-P	Field mustard	extracellular	28.3	30.0
Bra040107.1-P	Field mustard	extracellular	28.3	30.0
Bra014484.1-P	Field mustard	extracellular	36.23	26.67
Bra033563.1-P	Field mustard	extracellular	26.04	26.14
Bra011899.1-P	Field mustard	extracellular	25.28	24.91

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.3	EnsemblPlantsGene:Bra024215	EnsemblPlants:Bra024215.1	EnsemblPlants:Bra024215.1-P
InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575
GO:GO:0005576	GO:GO:0008150	GO:GO:0019953	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	InterPro:LolPI	UniProt:M4E611	PFAM:PF01357	PFAM:PF03330	PRINTS:PR00829
PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692	PANTHER:PTHR31692:SF5	InterPro:RlpA-like_DPBB
InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI0002540BB9
SEG:seg	:	:	:	:	:

Description

AT4G28250 (E=8e-130) ATEXPB3, EXPB3, ATHEXP BETA 1.6 | ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)

Coordinates

chrA03:-:26839846..26841236

Molecular Weight (calculated)

28714.7 Da

IEP (calculated)

9.018

GRAVY (calculated)

0.041

Length

265 amino acids

Sequence
(BLAST)

001: MQLPPAIILA TLCIVLQLLN ISSASVIPNR HVSNAHWLPA VATWYGSANG DGSDGGACGY GTLVDVKPFH ARVGAVNPIL FKNGEGCGAC YKVRCLDRSI
101: CSRRAVTVIV TDECPGCSKT NTHFDLSGAA FGRLAITGES GPLRNRGLIP VIYRRTACKY RRKNIAFHVN EGSTDFWLSL LVEFEEGEGD IGSMHIRQAG
201: AREWLEMKHV WGANWCIIGG PLKGPFSVKI TTLSAGRTLS ATDVVPRNWV PKATYTSRLN FSPVL

Best Arabidopsis Sequence Match ( AT4G28250.1 )
(BLAST)

001: MQLFPVMLAT LCIVLQLLIG SSALATTNRH VSNSHWLPAV ATWYGSPNGD GSDGGACGYG TLVDVKPLHA RVGAVNPILF KNGEGCGACY KVRCLDKSIC
101: SRRAVTVIIT DECPGCSKTS THFDLSGAVF GRLAIAGESG PLRNRGLIPV IYRRTACKYR GKNIAFHVNE GSTDFWLSLL VEFEDGEGDI GSMHIRQAGA
201: REWLEMKHVW GANWCIIGGP LKGPFSIKLT TLSAGKTLSA TDVVPRNWAP KATYSSRLNF SPVL

Arabidopsis Description

EXPB3EXPB3 [Source:UniProtKB/TrEMBL;Acc:A0A178USU9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.