Factsheet for TraesCS6B01G275700.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G249300.1	Wheat	extracellular	97.23	97.23
TraesCS6D01G231300.1	Wheat	extracellular	96.54	96.54
HORVU0Hr1G018320.1	Barley	extracellular	92.73	92.73
TraesCS3B01G535800.1	Wheat	extracellular	89.97	89.97
TraesCS6B01G275800.1	Wheat	extracellular	73.7	74.22
EER98447	Sorghum	extracellular	74.05	69.71
Os02t0658800-01	Rice	extracellular	69.55	68.84
Zm00001d019560_P001	Maize	plasma membrane	73.01	68.51
EER98449	Sorghum	extracellular	73.01	67.63
Zm00001d019557_P001	Maize	extracellular, plastid	58.82	58.82
TraesCS2B01G432300.1	Wheat	plastid	50.52	55.73
TraesCS2B01G607400.1	Wheat	extracellular	47.4	55.02
TraesCS2B01G095600.1	Wheat	extracellular	48.1	54.51
TraesCS2B01G432100.1	Wheat	extracellular	48.1	53.26
TraesCS2B01G432200.1	Wheat	extracellular, plastid	51.56	53.02
TraesCS2B01G095700.1	Wheat	extracellular	45.33	51.98
TraesCS2B01G122100.1	Wheat	extracellular	34.26	51.83
TraesCS1B01G226000.2	Wheat	extracellular	43.94	47.04
TraesCS1B01G222300.1	Wheat	extracellular	40.83	44.53
TraesCS3B01G014300.1	Wheat	extracellular, nucleus	42.21	44.53
TraesCS5B01G376500.1	Wheat	extracellular	47.4	44.34
TraesCS6B01G046300.1	Wheat	extracellular	41.87	44.32
TraesCS6B01G046000.1	Wheat	extracellular	41.87	44.32
TraesCS6B01G046200.1	Wheat	extracellular	41.52	43.96
TraesCS3B01G014400.1	Wheat	cytosol	37.72	43.95
TraesCS6B01G046100.1	Wheat	extracellular	41.18	43.59
TraesCS6B01G046400.1	Wheat	extracellular	41.18	43.59
TraesCS4B01G375200.1	Wheat	extracellular	42.91	42.47
TraesCS1B01G225800.1	Wheat	extracellular	39.45	42.07
TraesCS6B01G245700.1	Wheat	extracellular	42.91	41.89
TraesCS6B01G264400.1	Wheat	extracellular	38.75	41.79
TraesCS1B01G225700.1	Wheat	extracellular	43.25	41.39
TraesCS1B01G225900.1	Wheat	extracellular, mitochondrion, plastid	42.21	40.94
TraesCS3B01G526800.1	Wheat	extracellular	42.21	40.67
TraesCS3B01G524500.1	Wheat	extracellular	43.6	40.51
TraesCS4B01G362100.1	Wheat	extracellular	36.68	39.26
TraesCS2B01G480700.1	Wheat	extracellular	35.99	39.25
TraesCS4B01G362600.1	Wheat	extracellular, unclear	36.33	38.89
TraesCS4B01G362500.1	Wheat	extracellular	36.33	38.89
TraesCS1B01G226100.1	Wheat	extracellular	40.83	37.82
TraesCS2B01G390000.1	Wheat	extracellular	36.33	37.37
TraesCS5B01G079400.1	Wheat	extracellular, plasma membrane	43.94	37.24
TraesCS4B01G375600.1	Wheat	extracellular	39.45	33.43
TraesCS4B01G327200.1	Wheat	extracellular	25.95	27.99
TraesCS4B01G327100.1	Wheat	golgi	25.61	27.31
TraesCS4B01G326900.1	Wheat	extracellular	24.91	26.18
TraesCS1B01G217200.1	Wheat	extracellular	24.57	25.82
TraesCS7B01G468700.1	Wheat	endoplasmic reticulum, extracellular	22.49	20.57
TraesCS7B01G469200.1	Wheat	endoplasmic reticulum, extracellular	22.49	20.38
TraesCS7B01G469100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	22.15	9.94

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:35.1	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0019953
InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	InterPro:LolPI	PFAM:PF01357
PFAM:PF03330	PRINTS:PR00829	PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692
PANTHER:PTHR31692:SF50	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685
SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6B01G275700	EnsemblPlants:TraesCS6B01G275700.1	SEG:seg	:

Description

No Description!

Coordinates

chr6B:-:498542818..498544155

Molecular Weight (calculated)

30296.3 Da

IEP (calculated)

9.348

GRAVY (calculated)

-0.131

Length

289 amino acids

Sequence
(BLAST)

001: MAKTCTLALL GALLVLSLLV SPIACSRKLA KVGGHDKSAP VKGHKNQTTT NPSSSAAYGG GWLPAGATYY GNPNGDGSDG GACGYQTAVG HRPFSSMIAA
101: GSSPLFMAGK GCGACYDVKC TSNSACSGKP VTIVITDLSP GNLYPGEPCH FDMSGTALGA MAKPGMADKL RAGGVIRMQY KRVPCKYPGV NIAFRVDQGS
201: NPFYFKTLIE FEDDDGDLKA VALKEAGSGA WTPMAQDWGA LWRLNEGRQL RAPFSLRLTS DSGRKLVVSN VIPANWKAGA TYRSLVNYP

Best Arabidopsis Sequence Match ( AT1G65680.1 )
(BLAST)

001: MTILVVDRYY MLMNLLFALT CLLLNLTHCF SPKKFNISAA TTSDSDWSIA GSTWYGNPTG YGSDGGACGY GNAVAQPPFS KMVSAGGPSL FKSGKGCGAC
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF

Arabidopsis Description

EXPB2Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.