Factsheet for TraesCS6B01G245700.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G217100.1	Wheat	extracellular	97.97	97.64
TraesCS6D01G198400.1	Wheat	extracellular	97.97	96.99
HORVU6Hr1G055090.1	Barley	extracellular	85.81	94.78
TraesCS3B01G526800.1	Wheat	extracellular	78.38	77.33
TraesCS3B01G524500.1	Wheat	extracellular	80.74	76.85
Os03t0102700-01	Rice	plastid	71.62	75.99
TraesCS3B01G014300.1	Wheat	extracellular, nucleus	69.26	74.82
TraesCS3B01G014400.1	Wheat	cytosol	61.82	73.79
KXG40416	Sorghum	extracellular, vacuole	77.36	71.56
Zm00001d027283_P001	Maize	extracellular	73.99	68.87
TraesCS1B01G226000.2	Wheat	extracellular	61.49	67.41
TraesCS4B01G375600.1	Wheat	extracellular	76.01	65.98
TraesCS5B01G079400.1	Wheat	extracellular, plasma membrane	73.99	64.22
TraesCS6B01G046000.1	Wheat	extracellular	59.12	64.1
TraesCS6B01G046300.1	Wheat	extracellular	58.78	63.74
TraesCS6B01G046200.1	Wheat	extracellular	58.78	63.74
TraesCS6B01G046400.1	Wheat	extracellular	58.45	63.37
TraesCS6B01G046100.1	Wheat	extracellular	58.45	63.37
TraesCS4B01G375200.1	Wheat	extracellular	60.14	60.96
TraesCS1B01G225900.1	Wheat	extracellular, mitochondrion, plastid	59.8	59.4
TraesCS1B01G225800.1	Wheat	extracellular	54.05	59.04
TraesCS1B01G222300.1	Wheat	extracellular	48.99	54.72
TraesCS1B01G226100.1	Wheat	extracellular	57.09	54.17
TraesCS1B01G225700.1	Wheat	extracellular	55.07	53.97
TraesCS2B01G480700.1	Wheat	extracellular	46.62	52.08
TraesCS2B01G607400.1	Wheat	extracellular	41.22	49.0
GSMUA_AchrUn_...	Banana	extracellular	15.2	48.91
TraesCS2B01G095600.1	Wheat	extracellular	41.89	48.63
TraesCS2B01G432300.1	Wheat	plastid	42.91	48.47
TraesCS4B01G362500.1	Wheat	extracellular	43.58	47.78
TraesCS4B01G362600.1	Wheat	extracellular, unclear	43.58	47.78
TraesCS4B01G362100.1	Wheat	extracellular	43.58	47.78
TraesCS2B01G095700.1	Wheat	extracellular	40.54	47.62
TraesCS2B01G122100.1	Wheat	extracellular	29.05	45.03
TraesCS2B01G432100.1	Wheat	extracellular	39.53	44.83
TraesCS6B01G275800.1	Wheat	extracellular	43.24	44.6
TraesCS6B01G275700.1	Wheat	extracellular	41.89	42.91
TraesCS3B01G535800.1	Wheat	extracellular	41.55	42.56
TraesCS5B01G376500.1	Wheat	extracellular	42.57	40.78
TraesCS2B01G432200.1	Wheat	extracellular, plastid	38.18	40.21
TraesCS6B01G264400.1	Wheat	extracellular	33.78	37.31
TraesCS2B01G390000.1	Wheat	extracellular	33.45	35.23
TraesCS4B01G327100.1	Wheat	golgi	24.66	26.94
TraesCS4B01G327200.1	Wheat	extracellular	24.32	26.87
TraesCS4B01G326900.1	Wheat	extracellular	24.66	26.55
TraesCS1B01G217200.1	Wheat	extracellular	24.66	26.55
TraesCS7B01G468700.1	Wheat	endoplasmic reticulum, extracellular	21.96	20.57
TraesCS7B01G469200.1	Wheat	endoplasmic reticulum, extracellular	20.95	19.44
TraesCS7B01G469100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	20.61	9.47

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:35.1	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0019953
InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	InterPro:LolPI	PFAM:PF01357
PFAM:PF03330	PRINTS:PR00829	PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692
PANTHER:PTHR31692:SF23	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685
SignalP:SignalP-TM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6B01G245700	EnsemblPlants:TraesCS6B01G245700.1	SEG:seg	:

Description

No Description!

Coordinates

chr6B:-:438385906..438386910

Molecular Weight (calculated)

31468.9 Da

IEP (calculated)

4.561

GRAVY (calculated)

-0.154

Length

296 amino acids

Sequence
(BLAST)

001: MAAASAYAVA VALFCLLAAD GCCGCFWFLP AIFCPGHSPT PTPAPATPTP SPGTGTGTNV DGGGWLDARA TWYGAPGGAG PDDNGGACGF KNVNLPPFNA
101: MTSCGNEPLF KDGKGCGSCY QIRCVAHAAC SGVPETVIIT DMNYYPVARY HFDLSGTAFG AMAKDGRNDE LRHAGIIDMQ FKRVPCQYPG LSVTFHVEQG
201: SNPNYLAILV EYENGDGDVA QVDLMESRPD NGEPTGVWTP MRESWGSIWR LDTHRPLQGP FSLRVTNESG RSLVAGQVIP ADWQPDTVYS SLVQFD

Best Arabidopsis Sequence Match ( AT1G65680.1 )
(BLAST)

001: MTILVVDRYY MLMNLLFALT CLLLNLTHCF SPKKFNISAA TTSDSDWSIA GSTWYGNPTG YGSDGGACGY GNAVAQPPFS KMVSAGGPSL FKSGKGCGAC
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF

Arabidopsis Description

EXPB2Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.