Factsheet for TraesCS3B01G014300.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G000500.1	Wheat	extracellular	95.99	95.99
TraesCS3A01G011100.1	Wheat	extracellular	92.7	92.7
HORVU3Hr1G001920.2	Barley	extracellular	90.51	88.26
TraesCS3B01G014400.1	Wheat	cytosol	71.9	79.44
TraesCS6B01G245700.1	Wheat	extracellular	74.82	69.26
Os03t0102700-01	Rice	plastid	70.07	68.82
TraesCS4B01G375600.1	Wheat	extracellular	82.85	66.57
TraesCS3B01G526800.1	Wheat	extracellular	71.17	65.0
KXG40416	Sorghum	extracellular, vacuole	74.45	63.75
TraesCS1B01G226000.2	Wheat	extracellular	62.41	63.33
Zm00001d027283_P001	Maize	extracellular	73.36	63.21
TraesCS3B01G524500.1	Wheat	extracellular	71.53	63.02
TraesCS6B01G046000.1	Wheat	extracellular	62.41	62.64
TraesCS6B01G046400.1	Wheat	extracellular	62.04	62.27
TraesCS6B01G046200.1	Wheat	extracellular	62.04	62.27
TraesCS6B01G046300.1	Wheat	extracellular	61.68	61.9
TraesCS6B01G046100.1	Wheat	extracellular	61.68	61.9
TraesCS4B01G375200.1	Wheat	extracellular	61.68	57.88
TraesCS1B01G225900.1	Wheat	extracellular, mitochondrion, plastid	62.77	57.72
TraesCS1B01G225800.1	Wheat	extracellular	56.57	57.2
TraesCS5B01G079400.1	Wheat	extracellular, plasma membrane	70.8	56.89
TraesCS1B01G225700.1	Wheat	extracellular	59.85	54.3
TraesCS1B01G222300.1	Wheat	extracellular	51.82	53.58
TraesCS1B01G226100.1	Wheat	extracellular	58.39	51.28
TraesCS2B01G480700.1	Wheat	extracellular	48.54	50.19
TraesCS2B01G432300.1	Wheat	plastid	46.72	48.85
TraesCS2B01G432100.1	Wheat	extracellular	45.62	47.89
TraesCS2B01G095600.1	Wheat	extracellular	44.53	47.84
TraesCS2B01G607400.1	Wheat	extracellular	43.43	47.79
TraesCS4B01G362100.1	Wheat	extracellular	46.72	47.41
TraesCS4B01G362500.1	Wheat	extracellular	46.35	47.04
TraesCS4B01G362600.1	Wheat	extracellular, unclear	46.35	47.04
TraesCS2B01G095700.1	Wheat	extracellular	41.97	45.63
TraesCS2B01G432200.1	Wheat	extracellular, plastid	43.8	42.7
TraesCS2B01G122100.1	Wheat	extracellular	29.56	42.41
TraesCS3B01G535800.1	Wheat	extracellular	44.53	42.21
TraesCS6B01G275700.1	Wheat	extracellular	44.53	42.21
TraesCS6B01G275800.1	Wheat	extracellular	44.16	42.16
GSMUA_AchrUn_...	Banana	extracellular	13.87	41.3
TraesCS5B01G376500.1	Wheat	extracellular	44.16	39.16
TraesCS6B01G264400.1	Wheat	extracellular	37.23	38.06
TraesCS2B01G390000.1	Wheat	extracellular	36.5	35.59
TraesCS4B01G326900.1	Wheat	extracellular	25.91	25.82
TraesCS4B01G327100.1	Wheat	golgi	24.82	25.09
TraesCS1B01G217200.1	Wheat	extracellular	24.45	24.36
TraesCS4B01G327200.1	Wheat	extracellular	23.72	24.25
TraesCS7B01G468700.1	Wheat	endoplasmic reticulum, extracellular	20.8	18.04
TraesCS7B01G469200.1	Wheat	endoplasmic reticulum, extracellular	20.07	17.24
TraesCS7B01G469100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	20.07	8.54

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:35.1	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0019953
InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	InterPro:LolPI	PFAM:PF01357
PFAM:PF03330	PRINTS:PR00829	PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692
PANTHER:PTHR31692:SF23	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685
SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS3B01G014300	EnsemblPlants:TraesCS3B01G014300.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3B:+:6117551..6118783

Molecular Weight (calculated)

29839.6 Da

IEP (calculated)

7.773

GRAVY (calculated)

-0.273

Length

274 amino acids

Sequence
(BLAST)

001: MASSSIAVAA ALILCILVAH AHGCYAKHHA APSAANSSWL DAKATWYGAP HGAGPDDNGG ACGFKNVNLP PFSSMTSCGN QPLFKDGKGC GSCYQIRCLK
101: PDHPACSGVP KTVIITDMNY YPVSRYHFDL SGTAFGAMAK DGRNDELRHA GMINMQFKRV PCQYPGLTVT FHVEEGSNPF YMAILVEYEN GDGNVNQLDI
201: MESRPNGGKM APTGQWVPMK ESWGSIWRMD AHHPMKAPFS LRITNESGKT LVAEQVIPID WKPNKTYSSL VQFH

Best Arabidopsis Sequence Match ( AT1G65680.1 )
(BLAST)

001: MTILVVDRYY MLMNLLFALT CLLLNLTHCF SPKKFNISAA TTSDSDWSIA GSTWYGNPTG YGSDGGACGY GNAVAQPPFS KMVSAGGPSL FKSGKGCGAC
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF

Arabidopsis Description

EXPB2Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.