Factsheet for Zm00001d027283_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 20408568
nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40416	Sorghum	extracellular, vacuole	86.48	85.94
TraesCS5A01G537300.1	Wheat	cytosol, extracellular, plastid	42.45	83.85
HORVU6Hr1G055090.1	Barley	extracellular	66.98	79.48
TraesCS3D01G000400.1	Wheat	cytosol	48.43	75.86
HORVU3Hr1G073140.1	Barley	plastid	61.95	74.9
HORVU3Hr1G105170.1	Barley	plastid	61.95	74.9
TraesCS3D01G000500.1	Wheat	extracellular	63.84	74.09
TraesCS6B01G245700.1	Wheat	extracellular	68.87	73.99
Os03t0102700-01	Rice	plastid	64.78	73.84
TraesCS3B01G014300.1	Wheat	extracellular, nucleus	63.21	73.36
Zm00001d047090_P002	Maize	extracellular	62.26	73.33
TraesCS6D01G198400.1	Wheat	extracellular	68.87	73.24
TraesCS3A01G011200.1	Wheat	cytosol	36.79	73.12
TraesCS3A01G011100.1	Wheat	extracellular	62.89	72.99
TraesCS6A01G217100.1	Wheat	extracellular	67.92	72.73
Zm00001d029903_P002	Maize	extracellular	60.69	72.28
Zm00001d029906_P001	Maize	extracellular	60.69	72.01
HORVU3Hr1G001920.2	Barley	extracellular	63.21	71.53
Zm00001d047089_P001	Maize	extracellular	59.75	71.16
TraesCS3D01G476800.1	Wheat	extracellular	43.08	70.62
HORVU3Hr1G073120.1	Barley	extracellular	67.61	70.26
HORVU3Hr1G105180.1	Barley	extracellular	67.61	70.26
TraesCS3B01G014400.1	Wheat	cytosol	54.72	70.16
TraesCS3B01G524500.1	Wheat	extracellular	68.55	70.1
TraesCS3B01G526800.1	Wheat	extracellular	66.04	70.0
TraesCS3D01G474800.1	Wheat	extracellular	68.55	69.43
TraesCS3D01G476700.1	Wheat	extracellular	66.98	69.38
TraesCS3A01G480000.1	Wheat	extracellular	68.87	68.22
TraesCS4D01G361700.1	Wheat	extracellular	66.98	67.41
Zm00001d029913_P001	Maize	extracellular	57.86	66.67
TraesCS3A01G479900.1	Wheat	extracellular	66.35	66.14
Zm00001d047093_P001	Maize	extracellular	53.77	64.77
Zm00001d047096_P001	Maize	extracellular	56.6	63.83
Zm00001d029907_P001	Maize	extracellular	54.09	63.0
TraesCS4B01G375600.1	Wheat	extracellular	67.3	62.76
Zm00001d047091_P001	Maize	extracellular	52.52	61.17
HORVU3Hr1G105520.1	Barley	extracellular	66.04	60.87
Zm00001d027281_P001	Maize	extracellular	52.2	60.81
Zm00001d029899_P001	Maize	extracellular, mitochondrion	53.77	60.64
Zm00001d004586_P001	Maize	extracellular	59.43	60.38
Zm00001d047087_P001	Maize	extracellular	54.09	60.14
TraesCS5B01G079400.1	Wheat	extracellular, plasma membrane	63.84	59.53
TraesCS5A01G073100.1	Wheat	extracellular, plasma membrane	63.52	59.06
TraesCS5D01G086000.1	Wheat	extracellular, plasma membrane	63.52	58.21
HORVU5Hr1G019100.1	Barley	extracellular, plasma membrane	63.21	56.94
Zm00001d047147_P001	Maize	extracellular	48.11	56.88
Zm00001d047146_P001	Maize	extracellular	48.11	56.88
Zm00001d047135_P011	Maize	extracellular	47.48	56.13
Zm00001d047142_P001	Maize	extracellular	47.48	56.13
Zm00001d017736_P001	Maize	cytosol	33.96	55.96
Zm00001d047094_P001	Maize	extracellular	48.11	54.84
HORVU4Hr1G088080.4	Barley	plastid	67.92	53.6
Zm00001d017740_P001	Maize	extracellular	42.45	53.36
Zm00001d017735_P001	Maize	extracellular	42.14	52.96
Zm00001d017731_P001	Maize	extracellular	38.05	51.93
Zm00001d040608_P001	Maize	extracellular	43.4	51.49
Zm00001d017741_P001	Maize	extracellular	25.47	50.94
Zm00001d040609_P001	Maize	extracellular	43.08	50.93
Zm00001d048384_P001	Maize	extracellular	42.77	50.56
Zm00001d017732_P001	Maize	extracellular	42.77	50.37
Zm00001d017733_P001	Maize	extracellular	42.77	50.37
Zm00001d017737_P001	Maize	extracellular	42.77	50.37
Zm00001d017493_P001	Maize	extracellular	40.88	48.69
Zm00001d029827_P001	Maize	extracellular	34.91	48.26
Zm00001d026171_P001	Maize	extracellular	29.56	48.21
Zm00001d026170_P001	Maize	extracellular	38.68	46.95
Zm00001d051368_P001	Maize	extracellular	23.27	46.84
Zm00001d045861_P001	Maize	mitochondrion	38.99	46.79
Zm00001d045792_P001	Maize	extracellular	38.99	45.93
Zm00001d017495_P001	Maize	extracellular	40.57	43.88
Zm00001d026169_P001	Maize	extracellular	39.62	43.15
Zm00001d017494_P001	Maize	extracellular	38.99	41.89
Zm00001d017377_P001	Maize	extracellular	32.08	38.06
Zm00001d019560_P001	Maize	plasma membrane	35.85	37.01
Zm00001d002860_P002	Maize	extracellular	31.45	32.79
Zm00001d019557_P001	Maize	extracellular, plastid	28.3	31.14
Zm00001d017734_P001	Maize	cytosol	43.08	29.91
Zm00001d048344_P002	Maize	extracellular	22.33	25.91
Zm00001d027520_P001	Maize	extracellular	22.33	25.54
Zm00001d006360_P001	Maize	extracellular	21.38	25.0
Zm00001d029783_P003	Maize	extracellular	21.38	24.73
Zm00001d014826_P001	Maize	endoplasmic reticulum, extracellular, vacuole	19.81	19.75
Zm00001d033231_P003	Maize	extracellular	37.74	16.81

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:35.1	EntrezGene:541908	UniProt:B4FMR3	EMBL:BT038401
InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD	InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575
GO:GO:0005576	GO:GO:0008150	GO:GO:0019953	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	InterPro:LolPI	ProteinID:ONL92598.1	PFAM:PF01357	PFAM:PF03330	PRINTS:PR00829
PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692	PANTHER:PTHR31692:SF23	InterPro:RlpA-like_DPBB
InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI00017B6DC9
EnsemblPlantsGene:Zm00001d027283	EnsemblPlants:Zm00001d027283_P001	EnsemblPlants:Zm00001d027283_T001	SEG:seg	:	:

Description

beta expansin3Expansin-B4

Coordinates

chr1:+:1715993..1716949

Molecular Weight (calculated)

33910.3 Da

IEP (calculated)

5.109

GRAVY (calculated)

-0.416

Length

318 amino acids

Sequence
(BLAST)

001: MAVLWWWSSS CLSSRAVAAA LLCLLVAHGS DGTRHNSNNG GGSGSSSSSK SHKQGGGGRA HAAPTTPSPY PSPSPAAGNN SSSDDGWLNA RATWYGAPNG
101: AGPDDNGGAC GFKGVNMPPF SAMTSCGNEP IFKDGKGCGS CYQIRCKAHP ACSGVAETVI ITDMNYYPVA PYHFDLSGTA FGAMAKDEHN DELRHAGIID
201: IQFKRVPCQY PGLTVTFHIE RGSNPNYLAV LVEYENGDGD VVQVDLMESS PDDGEPTGVW EPMRESWGSI WRMDTRRPLQ GPFSLRVTNE SGKTLVADQV
301: IPADWQPDNV YSSIVQFE

Best Arabidopsis Sequence Match ( AT1G65680.1 )
(BLAST)

001: MTILVVDRYY MLMNLLFALT CLLLNLTHCF SPKKFNISAA TTSDSDWSIA GSTWYGNPTG YGSDGGACGY GNAVAQPPFS KMVSAGGPSL FKSGKGCGAC
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF

Arabidopsis Description

EXPB2Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.