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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, cytosol

Predictor Summary:
  • nucleus 1
  • extracellular 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, extracellular
Any Predictor:cytosol, extracellular, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:extracellular
PProwler:mitochondrion
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU93455 Sorghum extracellular 96.7 80.08
OQU93457 Sorghum extracellular 97.17 77.44
OQU93458 Sorghum extracellular 97.17 77.44
OQU93459 Sorghum extracellular 97.17 77.44
EER95683 Sorghum extracellular 97.17 77.44
EER95684 Sorghum extracellular 96.23 76.69
Zm00001d017736_P001 Maize cytosol 66.51 73.06
Zm00001d017740_P001 Maize extracellular 83.49 69.96
Zm00001d017735_P001 Maize extracellular 83.49 69.96
Zm00001d048384_P001 Maize extracellular 86.79 68.4
Zm00001d040609_P001 Maize extracellular 85.38 67.29
Zm00001d040608_P001 Maize extracellular 84.91 67.16
Zm00001d017737_P001 Maize extracellular 84.91 66.67
Zm00001d017731_P001 Maize extracellular 72.17 65.67
Zm00001d017732_P001 Maize extracellular 83.49 65.56
Zm00001d017733_P001 Maize extracellular 83.49 65.56
Os03t0106900-00 Rice extracellular 67.92 53.93
Os03t0106500-01 Rice plasma membrane 67.92 53.93
HORVU4Hr1G086830.1 Barley extracellular 66.98 53.38
Os03t0106800-01 Rice plasma membrane 66.51 52.81
TraesCS4B01G362600.1 Wheat extracellular, unclear 66.98 52.59
TraesCS4B01G362500.1 Wheat extracellular 66.98 52.59
TraesCS4B01G362100.1 Wheat extracellular 66.98 52.59
TraesCS4D01G355700.1 Wheat extracellular 66.04 52.24
TraesCS5A01G530100.1 Wheat extracellular 66.04 51.85
TraesCS5A01G530700.1 Wheat extracellular 66.04 51.85
HORVU4Hr1G086930.1 Barley extracellular 66.98 51.82
TraesCS4D01G355800.1 Wheat extracellular 65.57 51.48
TraesCS4D01G355100.1 Wheat extracellular 65.57 51.48
HORVU4Hr1G087070.2 Barley extracellular, mitochondrion, peroxisome 67.45 50.89
Os03t0106700-00 Rice extracellular 51.89 48.25
EER94537 Sorghum extracellular 56.13 44.74
KXG38972 Sorghum extracellular 55.66 44.36
KXG38969 Sorghum extracellular 55.66 44.36
EER91942 Sorghum extracellular 54.25 43.23
EER91947 Sorghum extracellular 51.42 40.52
EER94506 Sorghum extracellular 53.3 40.07
EER91949 Sorghum extracellular 53.3 40.07
EER91945 Sorghum extracellular 51.89 39.86
Zm00001d017734_P001 Maize cytosol 83.49 38.65
OQU92157 Sorghum extracellular 55.66 38.31
EER94500 Sorghum extracellular 50.94 37.24
EES05315 Sorghum extracellular 55.19 36.79
KXG38933 Sorghum mitochondrion 54.72 36.36
KXG40417 Sorghum mitochondrion 50.94 36.36
EER91948 Sorghum extracellular 47.17 35.97
KXG40416 Sorghum extracellular, vacuole 54.25 35.94
OQU92156 Sorghum plastid 53.77 35.08
EES11234 Sorghum extracellular 43.4 34.98
EES07509 Sorghum extracellular 42.92 34.47
EER88254 Sorghum extracellular 41.51 33.98
KXG19818 Sorghum extracellular 41.51 33.98
GSMUA_AchrUn_... Banana extracellular 14.62 33.7
EES11235 Sorghum extracellular 46.23 33.68
EES11233 Sorghum extracellular 43.4 31.94
EES07508 Sorghum extracellular 43.4 31.29
EES05780 Sorghum extracellular 43.4 31.19
EER93754 Sorghum extracellular 42.45 29.41
EES05488 Sorghum extracellular 36.32 28.21
KXG37946 Sorghum extracellular 42.45 27.69
EER98447 Sorghum extracellular 39.15 27.04
EER98449 Sorghum extracellular 39.15 26.6
EER99370 Sorghum extracellular 27.36 21.17
EER95568 Sorghum extracellular 25.94 20.37
KXG38992 Sorghum extracellular 24.53 18.44
OQU89980 Sorghum extracellular, plasma membrane, vacuole 16.51 15.56
KXG20919 Sorghum plastid 24.53 11.74
Protein Annotations
Gene3D:2.40.40.10Gene3D:2.60.40.760MapMan:35.1UniProt:A0A1Z5SCB1InterPro:Expan_Lol_pIInterPro:Expansin/allergen_DPBB_dom
InterPro:Expansin_CBDInterPro:Expansin_CBD_sfGO:GO:0000003GO:GO:0005575GO:GO:0005576GO:GO:0008150
GO:GO:0019953InterPro:IPR007112InterPro:IPR007117InterPro:IPR036749InterPro:IPR036908InterPro:LolPI
EnsemblPlants:OQU93456ProteinID:OQU93456ProteinID:OQU93456.1PFAM:PF01357PFAM:PF03330PRINTS:PR00829
PRINTS:PR01225PFscan:PS50842PFscan:PS50843PANTHER:PTHR31692PANTHER:PTHR31692:SF21InterPro:RlpA-like_DPBB
InterPro:RlpA-like_sfSMART:SM00837EnsemblPlantsGene:SORBI_3001G539760SUPFAM:SSF49590SUPFAM:SSF50685UniParc:UPI000B8B982E
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr1:+:80254494..80255132
Molecular Weight (calculated)
23089.4 Da
IEP (calculated)
7.759
GRAVY (calculated)
-0.476
Length
212 amino acids
Sequence
(BLAST)
001: RLHKPTGAGP DDNGGACGYK DVNKAPFNSK GACGNLPIFK DGLGCGSCFE IKCDKPAECS GEAVVVHITD MNYEQIAAYH FDLAGTAFAA MAKKGEEEKL
101: RKAGIIDMQF RRVKCKYGEK VTFHVEKGSN PNYLALLVKY VDGDVVGVDI KEKGGDAYQP LKHSWGAIWR KDSDKPIKFP VTVQITTEGG TKTAYEDVIP
201: EGWKADTTYT AK
Best Arabidopsis Sequence Match ( AT1G65680.1 )
(BLAST)
001: MTILVVDRYY MLMNLLFALT CLLLNLTHCF SPKKFNISAA TTSDSDWSIA GSTWYGNPTG YGSDGGACGY GNAVAQPPFS KMVSAGGPSL FKSGKGCGAC
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF
Arabidopsis Description
EXPB2Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.