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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 10
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:extracellular
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU93458 Sorghum extracellular 100.0 100.0
OQU93457 Sorghum extracellular 99.62 99.62
OQU93459 Sorghum extracellular 98.5 98.5
EER95684 Sorghum extracellular 97.74 97.74
OQU93455 Sorghum extracellular 93.98 97.66
OQU93456 Sorghum cytosol, extracellular 77.44 97.17
Zm00001d017736_P001 Maize cytosol 62.03 85.49
Zm00001d048384_P001 Maize extracellular 86.09 85.13
Zm00001d017740_P001 Maize extracellular 80.83 84.98
Zm00001d017735_P001 Maize extracellular 80.45 84.58
Zm00001d040609_P001 Maize extracellular 84.59 83.64
Zm00001d040608_P001 Maize extracellular 84.21 83.58
Zm00001d017737_P001 Maize extracellular 84.59 83.33
Zm00001d017733_P001 Maize extracellular 83.46 82.22
Zm00001d017732_P001 Maize extracellular 83.46 82.22
Zm00001d017731_P001 Maize extracellular 66.92 76.39
Os03t0106900-00 Rice extracellular 65.04 64.79
Os03t0106500-01 Rice plasma membrane 65.04 64.79
HORVU4Hr1G086830.1 Barley extracellular 63.53 63.53
TraesCS4B01G362100.1 Wheat extracellular 64.29 63.33
Os03t0106800-01 Rice plasma membrane 63.53 63.3
TraesCS4B01G362600.1 Wheat extracellular, unclear 63.91 62.96
TraesCS4B01G362500.1 Wheat extracellular 63.91 62.96
TraesCS4D01G355100.1 Wheat extracellular 63.53 62.59
TraesCS4D01G355800.1 Wheat extracellular 63.53 62.59
TraesCS5A01G530700.1 Wheat extracellular 63.53 62.59
TraesCS4D01G355700.1 Wheat extracellular 62.78 62.31
TraesCS5A01G530100.1 Wheat extracellular 63.16 62.22
HORVU4Hr1G086930.1 Barley extracellular 63.53 61.68
Os03t0106700-00 Rice extracellular 52.63 61.4
HORVU4Hr1G087070.2 Barley extracellular, mitochondrion, peroxisome 63.53 60.14
EER94537 Sorghum extracellular 54.51 54.51
KXG38972 Sorghum extracellular 54.14 54.14
KXG38969 Sorghum extracellular 53.76 53.76
Zm00001d017734_P001 Maize cytosol 82.71 48.03
EER91942 Sorghum extracellular 47.74 47.74
EER91945 Sorghum extracellular 47.37 45.65
EER91949 Sorghum extracellular 48.12 45.39
EER94506 Sorghum extracellular 48.12 45.39
EER94500 Sorghum extracellular 49.25 45.17
EER91947 Sorghum extracellular 45.49 44.98
OQU92157 Sorghum extracellular 49.25 42.53
KXG40417 Sorghum mitochondrion 46.62 41.75
EES05315 Sorghum extracellular 49.62 41.51
KXG40416 Sorghum extracellular, vacuole 49.62 41.25
KXG38933 Sorghum mitochondrion 49.25 41.07
EER91948 Sorghum extracellular 41.73 39.93
EES11234 Sorghum extracellular 39.1 39.54
KXG19818 Sorghum extracellular 38.35 39.38
OQU92156 Sorghum plastid 47.74 39.08
EER88254 Sorghum extracellular 37.97 39.0
EES11235 Sorghum extracellular 42.48 38.83
EES07509 Sorghum extracellular 37.97 38.26
EES07508 Sorghum extracellular 42.11 38.1
EES05780 Sorghum extracellular 42.11 37.97
EES11233 Sorghum extracellular 40.23 37.15
GSMUA_AchrUn_... Banana extracellular 12.03 34.78
EER98449 Sorghum extracellular 39.1 33.33
EER98447 Sorghum extracellular 38.35 33.22
EER93754 Sorghum extracellular 37.59 32.68
EES05488 Sorghum extracellular 33.08 32.23
KXG37946 Sorghum extracellular 37.97 31.08
EER95568 Sorghum extracellular 23.31 22.96
EER99370 Sorghum extracellular 23.31 22.63
KXG38992 Sorghum extracellular 22.56 21.28
OQU89980 Sorghum extracellular, plasma membrane, vacuole 15.79 18.67
KXG20919 Sorghum plastid 20.68 12.42
Protein Annotations
Gene3D:2.40.40.10Gene3D:2.60.40.760MapMan:35.1EntrezGene:8059515EntrezGene:8059518UniProt:C5WMS1
EnsemblPlants:EER95683ProteinID:EER95683ProteinID:EER95683.1InterPro:Expan_Lol_pIInterPro:Expansin/allergen_DPBB_domInterPro:Expansin_CBD
InterPro:Expansin_CBD_sfGO:GO:0000003GO:GO:0005575GO:GO:0005576GO:GO:0008150GO:GO:0019953
InterPro:IPR007112InterPro:IPR007117InterPro:IPR036749InterPro:IPR036908InterPro:LolPIProteinID:OQU93458.1
PFAM:PF01357PFAM:PF03330PRINTS:PR00829PRINTS:PR01225PFscan:PS50842PFscan:PS50843
PANTHER:PTHR31692PANTHER:PTHR31692:SF21InterPro:RlpA-like_DPBBInterPro:RlpA-like_sfSMART:SM00837EnsemblPlantsGene:SORBI_3001G539700
SUPFAM:SSF49590SUPFAM:SSF50685unigene:Sbi.16063unigene:Sbi.20961SignalP:SignalP-noTMTMHMM:TMhelix
UniParc:UPI0001A826DDRefSeq:XP_002466019.1RefSeq:XP_002468685.1SEG:seg::
Description
hypothetical protein
Coordinates
chr1:+:80252891..80254162
Molecular Weight (calculated)
28632.2 Da
IEP (calculated)
7.306
GRAVY (calculated)
-0.283
Length
266 amino acids
Sequence
(BLAST)
001: MGANMMSWSM QVALVVALAF LVGGAWCGPP KVAPGKNITA TYGSDWLEAK ATWYGKPTGA GPDDNGGACG YKDVNKAPFN SMGACGNLPI FKDGLGCGSC
101: FEIKCDKPAE CSGEAVVVHI TDMNYEQIAA YHFDLAGTAF GAMAKKGEEE KLRKAGIIDM KFRRVKCKYG EKVTFHVEKG SNPNYLALLV KYVDGDGDVV
201: GVDIKEKGGD AYQPLKHSWG AIWRKDSDKP IKFPVTVQIT TEGGTKTAYE DVIPEGWKAD TTYTAK
Best Arabidopsis Sequence Match ( AT1G65680.1 )
(BLAST)
001: MTILVVDRYY MLMNLLFALT CLLLNLTHCF SPKKFNISAA TTSDSDWSIA GSTWYGNPTG YGSDGGACGY GNAVAQPPFS KMVSAGGPSL FKSGKGCGAC
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF
Arabidopsis Description
EXPB2Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.