Factsheet for TraesCS4D01G323900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G499200.1	Wheat	extracellular	91.51	94.3
TraesCS4D01G324000.1	Wheat	extracellular	85.98	85.35
HORVU4Hr1G081800.6	Barley	extracellular, golgi, plastid	84.87	76.92
TraesCS4D01G323600.1	Wheat	extracellular	78.6	76.9
TraesCS4D01G323800.2	Wheat	extracellular	85.24	76.49
EER95568	Sorghum	extracellular	73.8	74.07
Os03t0132200-01	Rice	extracellular, plastid	71.96	69.89
Zm00001d027520_P001	Maize	extracellular	71.22	69.42
Zm00001d048344_P002	Maize	extracellular	69.0	68.25
TraesCS1D01G206700.1	Wheat	extracellular	62.73	60.07
GSMUA_Achr11P...	Banana	extracellular	57.2	58.27
GSMUA_Achr5P11590_001	Banana	extracellular	56.09	58.24
Solyc01g112000.2.1	Tomato	extracellular	54.24	56.32
PGSC0003DMT400047948	Potato	extracellular	53.87	56.15
GSMUA_Achr5P19030_001	Banana	extracellular	54.61	56.06
VIT_03s0038g03430.t01	Wine grape	extracellular	52.77	55.21
GSMUA_AchrUn_...	Banana	extracellular	38.01	54.79
GSMUA_Achr11P...	Banana	extracellular	52.77	53.96
AT3G45970.1	Thale cress	extracellular	51.29	52.45
AT4G38400.1	Thale cress	extracellular	51.29	52.45
CDY69288	Canola	extracellular	50.55	51.89
Bra033563.1-P	Field mustard	extracellular	50.55	51.89
KRH29091	Soybean	extracellular	49.45	51.74
AT3G45960.2	Thale cress	extracellular	49.82	51.33
CDY64278	Canola	extracellular	50.18	51.32
KRH24119	Soybean	extracellular	49.08	50.96
CDY72634	Canola	extracellular	49.82	50.94
Bra011899.1-P	Field mustard	extracellular	50.55	50.93
CDY61895	Canola	extracellular	50.55	50.93
CDY52801	Canola	extracellular	50.18	50.56
GSMUA_Achr1P02170_001	Banana	extracellular, peroxisome, plastid	54.24	47.88
TraesCS7D01G532200.1	Wheat	extracellular	42.8	37.54
TraesCS7D01G532400.1	Wheat	extracellular	41.7	36.69
TraesCS7D01G532500.1	Wheat	extracellular	41.7	35.2
TraesCS2D01G592900.1	Wheat	extracellular	28.41	30.92
TraesCS2D01G078800.1	Wheat	extracellular	28.78	30.71
TraesCS2D01G078900.1	Wheat	extracellular	27.68	29.53
TraesCS2D01G104800.1	Wheat	extracellular	27.68	29.53
TraesCS2D01G411000.1	Wheat	extracellular	28.41	29.39
TraesCS6D01G037600.1	Wheat	mitochondrion	12.55	29.31
TraesCS3D01G476800.1	Wheat	extracellular	20.3	28.35
TraesCS6D01G231400.1	Wheat	extracellular	27.68	28.2
TraesCS2D01G411200.1	Wheat	extracellular	26.94	27.97
TraesCS3D01G000400.1	Wheat	cytosol	20.66	27.59
TraesCS1D01G215400.1	Wheat	extracellular	25.83	26.52
TraesCS2D01G411100.1	Wheat	extracellular, plastid	27.31	26.33
TraesCS1D01G215300.1	Wheat	extracellular	26.57	26.28
TraesCS6D01G231200.1	Wheat	extracellular	27.68	26.13
TraesCS2D01G078600.1	Wheat	extracellular	22.88	25.94
TraesCS3D01G482800.1	Wheat	extracellular	27.31	25.69
TraesCS3D01G000500.1	Wheat	extracellular	25.83	25.55
TraesCS6D01G218500.1	Wheat	extracellular	25.09	25.37
TraesCS6D01G231300.1	Wheat	extracellular	26.94	25.26
TraesCS2D01G459300.1	Wheat	extracellular	24.35	24.91
TraesCS6D01G037500.1	Wheat	extracellular	24.72	24.54
TraesCS1D01G211500.1	Wheat	extracellular	23.99	24.53
TraesCS3D01G474800.1	Wheat	extracellular	28.04	24.2
TraesCS6D01G037700.1	Wheat	extracellular	24.35	24.18
TraesCS6D01G198400.1	Wheat	extracellular	26.57	24.08
TraesCS4D01G361900.1	Wheat	extracellular	26.2	23.91
TraesCS5D01G384200.1	Wheat	extracellular	26.94	23.7
TraesCS2D01G369200.2	Wheat	extracellular	24.35	23.66
TraesCS3D01G476700.1	Wheat	extracellular	26.57	23.45
TraesCS1D01G215500.1	Wheat	extracellular	26.57	22.86
TraesCS4D01G361700.1	Wheat	extracellular	26.57	22.78
TraesCS1D01G215100.1	Wheat	plastid	23.62	22.61
TraesCS4D01G355800.1	Wheat	extracellular	22.51	22.59
TraesCS4D01G355100.1	Wheat	extracellular	22.51	22.59
TraesCS4D01G355700.1	Wheat	extracellular	21.77	22.01
TraesCS5D01G086000.1	Wheat	extracellular, plasma membrane	26.2	20.46
TraesCS1D01G215200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	23.25	20.06

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:21.4.2.2	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	GO:GO:0005575	GO:GO:0005576	InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749
InterPro:IPR036908	PFAM:PF01357	PFAM:PF03330	PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843
PFscan:PS51257	PANTHER:PTHR31692	PANTHER:PTHR31692:SF4	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SUPFAM:SSF49590
SUPFAM:SSF50685	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS4D01G323900	EnsemblPlants:TraesCS4D01G323900.1	SEG:seg	:

Description

No Description!

Coordinates

chr4D:+:484840199..484841484

Molecular Weight (calculated)

28885.4 Da

IEP (calculated)

7.058

GRAVY (calculated)

-0.023

Length

271 amino acids

Sequence
(BLAST)

001: MTVSRCPILL LPLLFLCTLP PLASACDRCV HRTRAAYYAS SLTLAAGSCR YGAAAASLNG DLLAGAGPAL YRQGVGCGAC FQVRCKDEEL CATAGVKVVV
101: TDRASTKTND TDLVLSSPAF AAMARPGMAG RLSKLGAVDV EYKRVPCVYE GKNLSVRVED RSRAPGELAI TILYQGGQTD IVQVDLAQVG SSSSWTSLTR
201: DHGSAWSTSL APPGPLQLRA VVTGGYDGKW VSTDREVLPR QWRAGEVYDT GVQITDIAQE DCFPCDTQEW K

Best Arabidopsis Sequence Match ( AT3G45960.1 )
(BLAST)

001: MATSFFAGHI AAAIPSIYKD GAGCGACFQV RCKNPKLCNS KGTIVMVTDL NTSNQTDLVL SSRAFRAMAK PVVGVDKYLL KQGIVDVEYQ RVPCNYGKRN
101: LNVRVEEASK KPNYLAIKLL YQGGQTEVVG IDIAPVGSSQ WSYMSRSHGA VWATDKVPTG ALQFKFTVTG GYDGKTVWSK RVLPANWNSG RIYDAGVQIT
201: DIAQEGCDTC GHIWN

Arabidopsis Description

EXLA3Expansin-like A3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZT5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.