Factsheet for TraesCS1A01G212200.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G225800.1	Wheat	extracellular	95.57	95.57
HORVU1Hr1G054210.1	Barley	extracellular	90.77	90.77
TraesCS1D01G215200.1	Wheat	extracellular, mitochondrion, nucleus, plastid	97.05	83.76
TraesCS6A01G032700.1	Wheat	extracellular	84.13	83.52
TraesCS1A01G212300.1	Wheat	extracellular	66.42	65.69
TraesCS5A01G537300.1	Wheat	cytosol, extracellular, plastid	38.75	65.22
TraesCS1A01G212400.1	Wheat	extracellular	58.3	59.62
TraesCS1A01G212000.1	Wheat	extracellular	59.04	59.26
TraesCS3A01G011200.1	Wheat	cytosol	34.69	58.75
TraesCS3A01G011100.1	Wheat	extracellular	56.83	56.2
TraesCS6A01G217100.1	Wheat	extracellular	59.04	53.87
TraesCS1A01G212600.1	Wheat	extracellular	54.61	53.24
TraesCS1A01G208200.1	Wheat	extracellular	50.55	51.7
TraesCS5A01G538000.1	Wheat	extracellular	53.51	51.06
TraesCS3A01G480000.1	Wheat	extracellular	59.78	50.47
TraesCS3A01G479900.1	Wheat	extracellular	57.93	49.22
TraesCS2A01G458900.1	Wheat	extracellular	45.76	46.79
TraesCS5A01G073100.1	Wheat	extracellular, plasma membrane	57.93	45.91
TraesCS2A01G413600.1	Wheat	extracellular	44.28	45.8
TraesCS6A01G249700.1	Wheat	extracellular	44.65	45.49
TraesCS5A01G530100.1	Wheat	extracellular	44.65	44.81
TraesCS6A01G249400.2	Wheat	extracellular	43.54	44.53
TraesCS2A01G081200.1	Wheat	extracellular	41.7	44.49
TraesCS5A01G530700.1	Wheat	extracellular	44.28	44.44
TraesCS2A01G080800.1	Wheat	extracellular	41.33	44.09
TraesCS2A01G413400.1	Wheat	extracellular	42.44	44.06
TraesCS2A01G580200.1	Wheat	extracellular	40.59	43.82
TraesCS2A01G580300.1	Wheat	extracellular	39.85	43.37
TraesCS2A01G105200.1	Wheat	extracellular	38.75	41.34
GSMUA_AchrUn_...	Banana	extracellular	14.02	41.3
TraesCS6A01G249200.1	Wheat	extracellular	42.8	40.42
TraesCS2A01G413500.1	Wheat	extracellular, plastid	40.96	39.5
TraesCS6A01G249300.1	Wheat	extracellular	41.33	38.75
TraesCS3A01G488000.1	Wheat	extracellular	40.59	38.06
TraesCS6A01G235800.1	Wheat	extracellular	35.42	35.96
TraesCS2A01G373000.1	Wheat	extracellular	32.47	31.32
TraesCS5A01G498900.1	Wheat	extracellular	25.83	25.45
TraesCS5A01G499300.1	Wheat	nucleus	23.99	23.81
TraesCS5A01G499200.1	Wheat	extracellular	21.77	22.43
TraesCS5A01G499100.1	Wheat	extracellular	20.66	22.4
TraesCS1A01G203200.1	Wheat	extracellular	20.66	19.86
TraesCS7A01G545800.1	Wheat	extracellular	21.4	19.27
TraesCS7A01G545900.1	Wheat	extracellular	21.77	19.09
TraesCS7A01G546300.1	Wheat	endoplasmic reticulum, extracellular	21.77	18.38
TraesCS7A01G546000.1	Wheat	endoplasmic reticulum, extracellular	21.4	17.96

Protein Annotations

Gene3D:2.40.40.10	Gene3D:2.60.40.760	MapMan:35.1	InterPro:Expan_Lol_pI	InterPro:Expansin/allergen_DPBB_dom	InterPro:Expansin_CBD
InterPro:Expansin_CBD_sf	GO:GO:0000003	GO:GO:0005575	GO:GO:0005576	GO:GO:0008150	GO:GO:0019953
InterPro:IPR007112	InterPro:IPR007117	InterPro:IPR036749	InterPro:IPR036908	InterPro:LolPI	PFAM:PF01357
PFAM:PF03330	PRINTS:PR00829	PRINTS:PR01225	PFscan:PS50842	PFscan:PS50843	PANTHER:PTHR31692
PANTHER:PTHR31692:SF19	InterPro:RlpA-like_DPBB	InterPro:RlpA-like_sf	SMART:SM00837	SUPFAM:SSF49590	SUPFAM:SSF50685
SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1A01G212200	EnsemblPlants:TraesCS1A01G212200.1	:	:

Description

No Description!

Coordinates

chr1A:-:374958632..374959800

Molecular Weight (calculated)

29855.4 Da

IEP (calculated)

8.613

GRAVY (calculated)

-0.256

Length

271 amino acids

Sequence
(BLAST)

001: MAGVSSNAIA LVALLSVLFT GVRSAVNYDT AVARSYNSGW LPAKATWYGA PNGAGPDDNG GACGFKNVNQ YPISSMGACG NEPIFAGGEG CGMCYEIKCD
101: YSNNPSCSGQ PRRIVITDMN YYPVARYHLD LSGTAFGSMA RYGLNDRLRH AGIIDMQFRR VPCNFPGMKV TFHVQRGSNP NYLAVLVEYA NVDGTVVRME
201: LMQTINGRPT GYYQDMRRSW GSIWRMDTNR PLQGPFAIRI TSDTGKTLVA NNAIPAYWQP DHAYWSNLQF Y

Best Arabidopsis Sequence Match ( AT1G65680.1 )
(BLAST)

001: MTILVVDRYY MLMNLLFALT CLLLNLTHCF SPKKFNISAA TTSDSDWSIA GSTWYGNPTG YGSDGGACGY GNAVAQPPFS KMVSAGGPSL FKSGKGCGAC
101: YQVKCTSKSA CSKNPVTVVI TDECPGCVKE SVHFDLSGTA FGAMAISGQD SQLRNVGELQ ILYKKVECNY IGKTVTFQVD KGSNANSFAV LVAYVNGDGE
201: IGRIELKQAL DSDKWLSMSQ SWGAVWKLDV SSPLRAPLSL RVTSLESGKT VVASNVIPAN WQPGAIYKSN VNF

Arabidopsis Description

EXPB2Putative expansin-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHY6]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.