Factsheet for TraesCS5D01G430200.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 3
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G423800.1	Wheat	plastid	90.24	98.4
TraesCS5A01G421900.3	Wheat	cytosol, peroxisome, plastid	77.07	97.53
Os03t0784000-03	Rice	plastid	77.8	83.51
KXG37426	Sorghum	plastid	74.39	80.69
Zm00001d034338_P001	Maize	plastid	74.15	80.64
HORVU5Hr1G103040.10	Barley	mitochondrion, peroxisome	85.12	79.68
GSMUA_Achr7P07990_001	Banana	plastid	59.27	65.15
VIT_19s0027g00380.t01	Wine grape	plastid	53.41	59.35
KRH43821	Soybean	plastid	52.44	58.27
Solyc10g005620.2.1	Tomato	plastid	52.2	57.99
PGSC0003DMT400029217	Potato	plastid	51.95	57.72
AT1G56000.1	Thale cress	plastid	51.46	54.95
CDY08271	Canola	mitochondrion, plastid	50.24	53.37
CDY26077	Canola	mitochondrion, plastid	50.0	53.11
Bra037093.1-P	Field mustard	mitochondrion, plastid	50.0	53.11
HORVU5Hr1G103050.2	Barley	cytosol, plastid	16.83	41.82
AT1G55980.1	Thale cress	mitochondrion	44.39	38.89
TraesCS5D01G071300.1	Wheat	plastid	25.61	21.92

Protein Annotations

EnsemblPlants:TraesCS5D01G430200.1	EnsemblPlantsGene:TraesCS5D01G430200	Gene3D:3.50.50.60	Gene3D:3.90.660.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf
InterPro:IPR036188	PANTHER:PTHR16128	PANTHER:PTHR16128:SF5	PFAM:PF01593	PFAM:PF13450	SEG:seg
SUPFAM:SSF51905	TMHMM:TMhelix	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr5D:+:487576997..487579687

Molecular Weight (calculated)

44048.9 Da

IEP (calculated)

8.096

GRAVY (calculated)

-0.074

Length

410 amino acids

Sequence
(BLAST)

001: MQRLTFVHRE TPTAVPHSVR FPNPDRQGRA AGKNPTMSAA AANVAVIGAG MTGAVCASLL AARGVAVTLF DSGRGPGGRM AQRREVMDDG TELRFDHGAP
101: YFTVSNDEVV RVVGGWEARG LVAEWKAMFA CFDRETGKFR DFDKEGTMKK YVGVPGMNSI CKSLCQEDGV VSKFGVTIGK MDWLQDRSSW SLASLDGKDL
201: GSFDFVVATD KNIASQKVSG LTGKPPPLDL SVFPHLSAMI QDIPVRPCFA LMLAFSEPLA MVPVQGFSFY NSDSLSWAFC DSSKPGRHVP PNSQSWVLRS
301: TTEYASKVID SMGPRKPSAD ALAKVAEELF REFQATGLNI PQPIFMKAHR WGGAFPAISI GGDDKCVWEK NMKLAICGDF CASPSVEGAV LSGMSGASKI
401: LGCLNLPSGL

Best Arabidopsis Sequence Match ( AT1G56000.1 )
(BLAST)

001: MAATTISPAI RKQMSSVAVA MKVAVIGSGI SGAVCASTLA RNGVSVTIFD SGRGPGGRMS QRREIGEDGK ELMFDHGAPF FCVSNSDAMA LVHEWESRGF
101: VSEWKQVFGS FDCASNKFLG IQQEGDAKKY VGVPGMNSIS KALCNESGVK SMFGTGIAKM EWLEEEIPWL LTDSKGENLG RFDGVVASDK NIVSPRFTQV
201: TGLPPPLDLS LVPELATKLQ NIPVLPCFSL MLAFKEPLSS IPVKGLSFKN SEILSWAHCE STKPGRSTDS ERWILHSTPD YANSVIAKTG LQKLSSETLN
301: KISEEMFKEF QCSGLVSSLP FFMKAHRWGS AFPAKSIAVE ERCLWDRNRN LAICGDFCVS PNVEGAILSG LAAASKLLQT SSCL

Arabidopsis Description

AT1G56000 protein [Source:UniProtKB/TrEMBL;Acc:Q8VYV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.