Factsheet for VIT_19s0027g00380.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43821	Soybean	plastid	68.83	68.83
Solyc10g005620.2.1	Tomato	plastid	67.48	67.48
PGSC0003DMT400029217	Potato	plastid	66.67	66.67
AT1G56000.1	Thale cress	plastid	66.94	64.32
CDY08271	Canola	mitochondrion, plastid	65.85	62.95
CDY26077	Canola	mitochondrion, plastid	65.85	62.95
Bra037093.1-P	Field mustard	mitochondrion, plastid	65.58	62.69
GSMUA_Achr7P07990_001	Banana	plastid	62.87	62.2
Os03t0784000-03	Rice	plastid	61.52	59.42
TraesCS5A01G421900.3	Wheat	cytosol, peroxisome, plastid	50.68	57.72
TraesCS5B01G423800.1	Wheat	plastid	58.81	57.71
KXG37426	Sorghum	plastid	59.08	57.67
Zm00001d034338_P001	Maize	plastid	58.81	57.56
TraesCS5D01G430200.1	Wheat	peroxisome, plastid	59.35	53.41
HORVU5Hr1G103040.10	Barley	mitochondrion, peroxisome	56.91	47.95
AT1G55980.1	Thale cress	mitochondrion	55.56	43.8
HORVU5Hr1G103050.2	Barley	cytosol, plastid	12.74	28.48
VIT_14s0081g00490.t01	Wine grape	plastid	24.39	19.27
VIT_12s0055g01120.t01	Wine grape	cytosol	5.69	15.67

Protein Annotations

EntrezGene:100264528	wikigene:100264528	Gene3D:3.50.50.60	Gene3D:3.90.660.10	MapMan:35.2	EMBL:AM447915
ProteinID:CAN76485	ProteinID:CAN76485.1	ProteinID:CBI21797	ProteinID:CBI21797.3	UniProt:D7SWZ7	InterPro:FAD/NAD-bd_sf
EMBL:FN595234	InterPro:IPR036188	EntrezGene:LOC100264528	wikigene:LOC100264528	PFAM:PF13450	PRINTS:PR00419
PANTHER:PTHR16128	PANTHER:PTHR16128:SF5	SUPFAM:SSF51905	TIGR:TC60279	UniParc:UPI00015CA5AE	ArrayExpress:VIT_19s0027g00380
EnsemblPlantsGene:VIT_19s0027g00380	EnsemblPlants:VIT_19s0027g00380.t01	unigene:Vvi.6966	RefSeq:XP_002270560	RefSeq:XP_002270560.1	SEG:seg

Description

No Description!

Coordinates

chr19:-:19094294..19106279

Molecular Weight (calculated)

40200.2 Da

IEP (calculated)

6.961

GRAVY (calculated)

0.010

Length

369 amino acids

Sequence
(BLAST)

001: MASPVSRVAV VGSGISGAVC ASLLARNGVS VTLFESARGP GGRMSYRKEI TEDGKELVFD HGAPLFTVSN PDVLGIVREW EARGLVAEWK ENFASFDCIS
101: RKFIDFEKEG LSEKYVGVPV MNSICRALCH EPGVESKFGV GVGSLEWFDE KNLWSLTGLD GQNLGNFEGV VASDKNIFSK RFTDVTGRPP PLDLNLIPEL
201: AAKLQEVPVC SCFVLMLAFT KPLSSISVKG FSFKNSEILS WAFCDSSKPG HPATSERWVL HSTMEYARGV VAQIGLQKPS SSTLAKVAEE LFEEFQRTGL
301: TISQPFFKKA HRWGSAFPAA SIAREEKCLW DRKKRVAICG DFCVSPTVEG AILSGMAASS KLTEFLSCL

Best Arabidopsis Sequence Match ( AT1G56000.1 )
(BLAST)

001: MAATTISPAI RKQMSSVAVA MKVAVIGSGI SGAVCASTLA RNGVSVTIFD SGRGPGGRMS QRREIGEDGK ELMFDHGAPF FCVSNSDAMA LVHEWESRGF
101: VSEWKQVFGS FDCASNKFLG IQQEGDAKKY VGVPGMNSIS KALCNESGVK SMFGTGIAKM EWLEEEIPWL LTDSKGENLG RFDGVVASDK NIVSPRFTQV
201: TGLPPPLDLS LVPELATKLQ NIPVLPCFSL MLAFKEPLSS IPVKGLSFKN SEILSWAHCE STKPGRSTDS ERWILHSTPD YANSVIAKTG LQKLSSETLN
301: KISEEMFKEF QCSGLVSSLP FFMKAHRWGS AFPAKSIAVE ERCLWDRNRN LAICGDFCVS PNVEGAILSG LAAASKLLQT SSCL

Arabidopsis Description

AT1G56000 protein [Source:UniProtKB/TrEMBL;Acc:Q8VYV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.