Factsheet for TraesCS5B01G423800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G421900.3	Wheat	cytosol, peroxisome, plastid	84.04	97.53
TraesCS5D01G430200.1	Wheat	peroxisome, plastid	98.4	90.24
Os03t0784000-03	Rice	plastid	85.11	83.77
KXG37426	Sorghum	plastid	81.38	80.95
Zm00001d034338_P001	Maize	plastid	81.12	80.9
HORVU5Hr1G103040.10	Barley	mitochondrion, peroxisome	92.82	79.68
GSMUA_Achr7P07990_001	Banana	plastid	64.63	65.15
VIT_19s0027g00380.t01	Wine grape	plastid	57.71	58.81
KRH43821	Soybean	plastid	56.65	57.72
Solyc10g005620.2.1	Tomato	plastid	56.38	57.45
PGSC0003DMT400029217	Potato	plastid	56.12	57.18
AT1G56000.1	Thale cress	plastid	55.59	54.43
CDY08271	Canola	mitochondrion, plastid	54.26	52.85
CDY26077	Canola	mitochondrion, plastid	53.99	52.59
Bra037093.1-P	Field mustard	mitochondrion, plastid	53.99	52.59
HORVU5Hr1G103050.2	Barley	cytosol, plastid	18.35	41.82
AT1G55980.1	Thale cress	mitochondrion	47.07	37.82
TraesCS5B01G067100.1	Wheat	mitochondrion, plastid	26.6	21.01

Protein Annotations

Gene3D:3.50.50.60	Gene3D:3.90.660.10	MapMan:35.2	InterPro:Amino_oxidase	InterPro:FAD/NAD-bd_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:IPR036188
PFAM:PF01593	PFAM:PF13450	PANTHER:PTHR16128	PANTHER:PTHR16128:SF5	SUPFAM:SSF51905	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS5B01G423800	EnsemblPlants:TraesCS5B01G423800.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5B:+:600119320..600122541

Molecular Weight (calculated)

40277.5 Da

IEP (calculated)

7.265

GRAVY (calculated)

0.022

Length

376 amino acids

Sequence
(BLAST)

001: MSAAAANVAV IGAGMTGAVC ASLLAARGVA VTLFDSGRGP GGRMAQRREV MDDGTELRFD HGAPYFTVSN DEVARVVGGW EARGLVAEWK AMFACFDRET
101: GKFRDFDKVL EGTMKKYVGV PGMNSICKSL CQEDGLVTKF GVTIGKMDWL QDRSSWSLAS LDGKDLGSFD FVVATDKNIA SQKVSGLTGK PPPLDLSVFP
201: HLSAMIQDIP VRPCFALMLA FSEPLAMVPV QGFSFYNSDS LSWAFCDSSK PGRHVPPNSQ SWVLRSTTEY ASKVIDSMGP RKPSADALAK VAEELFREFQ
301: ATGLNIPQPI FMKAHRWGGA FPAISIGGDD KCVWEKNMKL AICGDFCASP SVEGAVLSGM RGASKILGCL NLPSGL

Best Arabidopsis Sequence Match ( AT1G56000.1 )
(BLAST)

001: MAATTISPAI RKQMSSVAVA MKVAVIGSGI SGAVCASTLA RNGVSVTIFD SGRGPGGRMS QRREIGEDGK ELMFDHGAPF FCVSNSDAMA LVHEWESRGF
101: VSEWKQVFGS FDCASNKFLG IQQEGDAKKY VGVPGMNSIS KALCNESGVK SMFGTGIAKM EWLEEEIPWL LTDSKGENLG RFDGVVASDK NIVSPRFTQV
201: TGLPPPLDLS LVPELATKLQ NIPVLPCFSL MLAFKEPLSS IPVKGLSFKN SEILSWAHCE STKPGRSTDS ERWILHSTPD YANSVIAKTG LQKLSSETLN
301: KISEEMFKEF QCSGLVSSLP FFMKAHRWGS AFPAKSIAVE ERCLWDRNRN LAICGDFCVS PNVEGAILSG LAAASKLLQT SSCL

Arabidopsis Description

AT1G56000 protein [Source:UniProtKB/TrEMBL;Acc:Q8VYV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.