CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
PProwler:	plastid
PTS1:	peroxisome
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0027g00380.t01	Wine grape	plastid	68.83	68.83
Solyc10g005620.2.1	Tomato	plastid	66.4	66.4
PGSC0003DMT400029217	Potato	plastid	65.58	65.58
AT1G56000.1	Thale cress	plastid	66.67	64.06
CDY26077	Canola	mitochondrion, plastid	66.12	63.21
CDY08271	Canola	mitochondrion, plastid	65.31	62.44
GSMUA_Achr7P07990_001	Banana	plastid	62.87	62.2
Bra037093.1-P	Field mustard	mitochondrion, plastid	65.04	62.18
Os03t0784000-03	Rice	plastid	59.35	57.33
TraesCS5B01G423800.1	Wheat	plastid	57.72	56.65
TraesCS5A01G421900.3	Wheat	cytosol, peroxisome, plastid	48.51	55.25
Zm00001d034338_P001	Maize	plastid	56.1	54.91
KXG37426	Sorghum	plastid	55.28	53.97
TraesCS5D01G430200.1	Wheat	peroxisome, plastid	58.27	52.44
HORVU5Hr1G103040.10	Barley	mitochondrion, peroxisome	55.56	46.8
AT1G55980.1	Thale cress	mitochondrion	55.56	43.8
HORVU5Hr1G103050.2	Barley	cytosol, plastid	12.2	27.27
KRH68746	Soybean	cytosol, peroxisome, plastid	7.05	22.22
KRG96985	Soybean	mitochondrion	18.16	19.31

Protein Annotations

EntrezGene:100816696	Gene3D:3.50.50.60	Gene3D:3.90.660.10	MapMan:35.2	EMBL:ACUP02004897	InterPro:FAD/NAD-bd_sf
EnsemblPlantsGene:GLYMA_08G173600	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	UniProt:I1KU65	InterPro:IPR036188	ProteinID:KRH43819.1	ProteinID:KRH43820.1	EnsemblPlants:KRH43821
ProteinID:KRH43821	ProteinID:KRH43821.1	ProteinID:KRH43822.1	ProteinID:KRH43823.1	PFAM:PF13450	PANTHER:PTHR16128
PANTHER:PTHR16128:SF5	SUPFAM:SSF51905	UniParc:UPI0002338575	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:13828191..13836777

Molecular Weight (calculated)

40350.0 Da

IEP (calculated)

6.864

GRAVY (calculated)

-0.170

Length

369 amino acids

Sequence
(BLAST)

001: MSSAAFKVGV LGSGISGAVR ASTLARNGVS VTLFESARGP GGRMSQRRER TEDGTELHFD HGAPFFSVSK SEVLHLVQEW ESRGLVAEWK EKFASFDFHT
101: LKFNNIEQEG SSKRYVGVPG MNSICKALCN ESGVESKFGV GIGRIEWLHD EKLWSLIGVD GQNLGQFKGL VASDKNIVSP RVAEVTGRTP PLDIKLVPEL
201: SEKLLDLPVK PCFIVMLAFA EPLSTVPVKA FSFENSEVLS QAYCDSSKPN RSTTSERWVL HSTAEYAEDI IAQTGLKKPS DITLNKVAEQ LLQEFQSTGL
301: ITSQPFFKKA HRWGSAFPAA SIAQEEKCLW DRNKRLAICG DFCVSPNVEG AIDSAFAAAL RLKDSVSSL

Best Arabidopsis Sequence Match ( AT1G56000.1 )
(BLAST)

001: MAATTISPAI RKQMSSVAVA MKVAVIGSGI SGAVCASTLA RNGVSVTIFD SGRGPGGRMS QRREIGEDGK ELMFDHGAPF FCVSNSDAMA LVHEWESRGF
101: VSEWKQVFGS FDCASNKFLG IQQEGDAKKY VGVPGMNSIS KALCNESGVK SMFGTGIAKM EWLEEEIPWL LTDSKGENLG RFDGVVASDK NIVSPRFTQV
201: TGLPPPLDLS LVPELATKLQ NIPVLPCFSL MLAFKEPLSS IPVKGLSFKN SEILSWAHCE STKPGRSTDS ERWILHSTPD YANSVIAKTG LQKLSSETLN
301: KISEEMFKEF QCSGLVSSLP FFMKAHRWGS AFPAKSIAVE ERCLWDRNRN LAICGDFCVS PNVEGAILSG LAAASKLLQT SSCL

Arabidopsis Description

AT1G56000 protein [Source:UniProtKB/TrEMBL;Acc:Q8VYV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.