CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034338_P001	Maize	plastid	91.8	92.04
Os03t0784000-03	Rice	plastid	83.33	82.46
TraesCS5B01G423800.1	Wheat	plastid	80.95	81.38
TraesCS5A01G421900.3	Wheat	cytosol, peroxisome, plastid	68.52	79.94
TraesCS5D01G430200.1	Wheat	peroxisome, plastid	80.69	74.39
HORVU5Hr1G103040.10	Barley	mitochondrion, peroxisome	75.93	65.53
GSMUA_Achr7P07990_001	Banana	plastid	63.76	64.61
VIT_19s0027g00380.t01	Wine grape	plastid	57.67	59.08
Solyc10g005620.2.1	Tomato	plastid	55.03	56.37
PGSC0003DMT400029217	Potato	plastid	54.5	55.83
KRH43821	Soybean	plastid	53.97	55.28
AT1G56000.1	Thale cress	plastid	54.5	53.65
CDY08271	Canola	mitochondrion, plastid	53.44	52.33
CDY26077	Canola	mitochondrion, plastid	53.17	52.07
Bra037093.1-P	Field mustard	mitochondrion, plastid	53.17	52.07
AT1G55980.1	Thale cress	mitochondrion	46.56	37.61
HORVU5Hr1G103050.2	Barley	cytosol, plastid	15.34	35.15
EES16280	Sorghum	plastid	27.25	21.78

Protein Annotations

EnsemblPlants:KXG37426	EnsemblPlantsGene:SORBI_3001G067700	Gene3D:3.50.50.60	Gene3D:3.90.660.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	InterPro:FAD/NAD-bd_sf	InterPro:IPR036188	PANTHER:PTHR16128
PANTHER:PTHR16128:SF5	PFAM:PF13450	ProteinID:KXG37426	ProteinID:KXG37426.1	SEG:seg	SUPFAM:SSF51905
TMHMM:TMhelix	UniParc:UPI0003C6B2A2	UniProt:A0A1B6QHN9	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr1:-:5118573..5128226

Molecular Weight (calculated)

40121.9 Da

IEP (calculated)

7.843

GRAVY (calculated)

0.093

Length

378 amino acids

Sequence
(BLAST)

001: MSSAAVAAAN VAVIGAGISG SVCASLLAAR GVAVTLFDSG RGAGGRMAQR REVIEDGTEL RFDHGAPYFT VTNNEVARVV SGWEARGIVA EWKATFACFD
101: LATGKFTDFE KEGTAKKYVG VPAMNSICKS LCLEDGVVAK FGVTVGKMDW LQDRSSWSLA SLDGKDLGNF DYVVATDKNV ASTSFSGLTG RPPPLDLSSF
201: PRLPTILQDI PVRPCFALMV AFSEPLAMVP VHGFSFNNSN SLSWAFCNSS KPGRACVPPN RQSWVLHSTT EYASKVVKNI GPRKPSAEAL AKVADELFSE
301: FQATGLSIPQ PIFMRAHRWG AAFPAIAISG DDKCVWDKST KLAICGDFCT NPSVEGAILS ATRGASKILE CLSLPSGL

Best Arabidopsis Sequence Match ( AT1G56000.1 )
(BLAST)

001: MAATTISPAI RKQMSSVAVA MKVAVIGSGI SGAVCASTLA RNGVSVTIFD SGRGPGGRMS QRREIGEDGK ELMFDHGAPF FCVSNSDAMA LVHEWESRGF
101: VSEWKQVFGS FDCASNKFLG IQQEGDAKKY VGVPGMNSIS KALCNESGVK SMFGTGIAKM EWLEEEIPWL LTDSKGENLG RFDGVVASDK NIVSPRFTQV
201: TGLPPPLDLS LVPELATKLQ NIPVLPCFSL MLAFKEPLSS IPVKGLSFKN SEILSWAHCE STKPGRSTDS ERWILHSTPD YANSVIAKTG LQKLSSETLN
301: KISEEMFKEF QCSGLVSSLP FFMKAHRWGS AFPAKSIAVE ERCLWDRNRN LAICGDFCVS PNVEGAILSG LAAASKLLQT SSCL

Arabidopsis Description

AT1G56000 protein [Source:UniProtKB/TrEMBL;Acc:Q8VYV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.