Factsheet for Solyc10g005620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	plastid
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029217	Potato	plastid	97.83	97.83
VIT_19s0027g00380.t01	Wine grape	plastid	67.48	67.48
KRH43821	Soybean	plastid	66.4	66.4
AT1G56000.1	Thale cress	plastid	62.87	60.42
GSMUA_Achr7P07990_001	Banana	plastid	59.89	59.25
CDY26077	Canola	mitochondrion, plastid	61.79	59.07
CDY08271	Canola	mitochondrion, plastid	61.52	58.81
Bra037093.1-P	Field mustard	mitochondrion, plastid	60.98	58.29
Os03t0784000-03	Rice	plastid	59.08	57.07
TraesCS5B01G423800.1	Wheat	plastid	57.45	56.38
Zm00001d034338_P001	Maize	plastid	56.64	55.44
KXG37426	Sorghum	plastid	56.37	55.03
TraesCS5A01G421900.3	Wheat	cytosol, peroxisome, plastid	47.43	54.01
TraesCS5D01G430200.1	Wheat	peroxisome, plastid	57.99	52.2
HORVU5Hr1G103040.10	Barley	mitochondrion, peroxisome	54.47	45.89
AT1G55980.1	Thale cress	mitochondrion	52.85	41.67
HORVU5Hr1G103050.2	Barley	cytosol, plastid	10.84	24.24
Solyc01g097160.2.1	Tomato	plastid	26.56	19.6

Protein Annotations

EnsemblPlants:Solyc10g005620.2.1	EnsemblPlantsGene:Solyc10g005620.2	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:FAD/NAD-bd_sf	InterPro:IPR036188
PANTHER:PTHR16128	PANTHER:PTHR16128:SF5	PFAM:PF13450	PRINTS:PR00419	SUPFAM:SSF51905	UniParc:UPI000276C965
UniProt:K4CX94	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr10:-:500622..504454

Molecular Weight (calculated)

40486.5 Da

IEP (calculated)

7.278

GRAVY (calculated)

-0.169

Length

369 amino acids

Sequence
(BLAST)

001: MANVAAKVAV IGSGISGAVC ASTLAKNGVS VTLFESGRGP GGRMSQRREM TEDGRELHFD HGVPYFSAKN PDVLRLICEW QSKGLVAEWK EKFATFDCDS
101: KQFLDIEQEG LEKKYVGVPG MNSICKSLCQ EPGVQSRFGV GVGRLEWLDN EDSWSLTGLN GESLGYFKGV VTSDKSTFSQ RFTNVTGKPV PIDMEKFPEI
201: SLKMMEIPVN PCFALMLAFE EPLTEIPIRG FSFNSSKVLH RAFCDSSKPG RSRNSERWVL HSTAEYAQDV IAQTGLQKPS SATLMKVAEE LFQEFQSTKL
301: SISQAFFKKA HRWGSAFPAI SVAENEKCLW DAKKRLAVCG DFCVSPNVEG AIISGLAAAA KCSEVLCRL

Best Arabidopsis Sequence Match ( AT1G56000.1 )
(BLAST)

001: MAATTISPAI RKQMSSVAVA MKVAVIGSGI SGAVCASTLA RNGVSVTIFD SGRGPGGRMS QRREIGEDGK ELMFDHGAPF FCVSNSDAMA LVHEWESRGF
101: VSEWKQVFGS FDCASNKFLG IQQEGDAKKY VGVPGMNSIS KALCNESGVK SMFGTGIAKM EWLEEEIPWL LTDSKGENLG RFDGVVASDK NIVSPRFTQV
201: TGLPPPLDLS LVPELATKLQ NIPVLPCFSL MLAFKEPLSS IPVKGLSFKN SEILSWAHCE STKPGRSTDS ERWILHSTPD YANSVIAKTG LQKLSSETLN
301: KISEEMFKEF QCSGLVSSLP FFMKAHRWGS AFPAKSIAVE ERCLWDRNRN LAICGDFCVS PNVEGAILSG LAAASKLLQT SSCL

Arabidopsis Description

AT1G56000 protein [Source:UniProtKB/TrEMBL;Acc:Q8VYV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.