CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08271	Canola	mitochondrion, plastid	97.67	97.67
AT1G56000.1	Thale cress	plastid	89.12	89.58
KRH43821	Soybean	plastid	63.21	66.12
VIT_19s0027g00380.t01	Wine grape	plastid	62.95	65.85
AT1G55980.1	Thale cress	mitochondrion	75.13	61.97
PGSC0003DMT400029217	Potato	plastid	59.07	61.79
Solyc10g005620.2.1	Tomato	plastid	59.07	61.79
GSMUA_Achr7P07990_001	Banana	plastid	58.81	60.86
Os03t0784000-03	Rice	plastid	54.92	55.5
Zm00001d034338_P001	Maize	plastid	53.11	54.38
TraesCS5B01G423800.1	Wheat	plastid	52.59	53.99
KXG37426	Sorghum	plastid	52.07	53.17
TraesCS5A01G421900.3	Wheat	cytosol, peroxisome, plastid	43.78	52.16
TraesCS5D01G430200.1	Wheat	peroxisome, plastid	53.11	50.0
HORVU5Hr1G103040.10	Barley	mitochondrion, peroxisome	50.52	44.52
HORVU5Hr1G103050.2	Barley	cytosol, plastid	11.4	26.67
CDY42167	Canola	extracellular	11.92	21.7
CDX74176	Canola	plastid	26.42	20.9
CDY40666	Canola	plastid	26.17	20.7

Protein Annotations

EnsemblPlants:CDY26077	EnsemblPlantsGene:GSBRNA2T00034693001	Gene3D:3.50.50.60	Gene3D:3.90.660.10	GO:A0A078GLP8	InterPro:FAD/NAD-bd_sf
InterPro:IPR036188	PANTHER:PTHR16128	PANTHER:PTHR16128:SF5	PFAM:PF13450	PRINTS:PR00419	ProteinID:CDY26077
ProteinID:CDY26077.1	SEG:seg	SUPFAM:SSF51905	UniParc:UPI0004EF0474	UniProt:A0A078GLP8	MapMan:35.2

Description

BnaC06g11190DBnaC06g11190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLP8]

Coordinates

chrLK032185:-:67240..69437

Molecular Weight (calculated)

41622.9 Da

IEP (calculated)

7.854

GRAVY (calculated)

-0.028

Length

386 amino acids

Sequence
(BLAST)

001: MSASVLISPA IRRRSVSVAM KVAVIGSGIS GAVCASTLAR NGVSVTIFDS GRGPGGRTSQ RREVGEDGKE LTFDHGAPFF SVTNSDAMAL VHEWESRGFV
101: SQWKQVFGSF DCASNKFLGS IQQEGDANNN KYVGVPGMNS ISKALCNQSG VESMFGTGIA KLEWLEEEIP WLLKDSKGQN LGRFDGVVAS DKNIVSPRFT
201: QVTGLPPPLD LNLVPELVTK LQDIPVLPCF SLMLAFKEPL SLIPAKGLSF KNSEILSWAH CDSTKPGRST DSERWILHST PGYASSVIAK TGLQKLSSET
301: LDKISEEMFK EFQCSGLVCS LPFFMKAHRW GSAFPAKSIA VEERCLWDRN RNLAICGDFC VSPNVQGAIL SGLAAASKLL QASSCL

Best Arabidopsis Sequence Match ( AT1G56000.1 )
(BLAST)

001: MAATTISPAI RKQMSSVAVA MKVAVIGSGI SGAVCASTLA RNGVSVTIFD SGRGPGGRMS QRREIGEDGK ELMFDHGAPF FCVSNSDAMA LVHEWESRGF
101: VSEWKQVFGS FDCASNKFLG IQQEGDAKKY VGVPGMNSIS KALCNESGVK SMFGTGIAKM EWLEEEIPWL LTDSKGENLG RFDGVVASDK NIVSPRFTQV
201: TGLPPPLDLS LVPELATKLQ NIPVLPCFSL MLAFKEPLSS IPVKGLSFKN SEILSWAHCE STKPGRSTDS ERWILHSTPD YANSVIAKTG LQKLSSETLN
301: KISEEMFKEF QCSGLVSSLP FFMKAHRWGS AFPAKSIAVE ERCLWDRNRN LAICGDFCVS PNVEGAILSG LAAASKLLQT SSCL

Arabidopsis Description

AT1G56000 protein [Source:UniProtKB/TrEMBL;Acc:Q8VYV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.