CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40666	Canola	plastid	67.92	29.51
CDX74176	Canola	plastid	66.98	29.1
AT3G04650.1	Thale cress	plastid	66.04	28.81
KRG96985	Soybean	mitochondrion	40.57	24.78
PGSC0003DMT400070768	Potato	plastid	51.42	24.38
VIT_14s0081g00490.t01	Wine grape	plastid	51.89	23.55
Solyc01g097160.2.1	Tomato	plastid	53.3	22.6
EES16280	Sorghum	plastid	48.58	21.78
TraesCS5B01G067100.1	Wheat	mitochondrion, plastid	48.11	21.43
TraesCS5A01G059800.2	Wheat	plastid	48.11	21.29
GSMUA_Achr8P03160_001	Banana	plastid	49.06	21.22
Os12t0597400-01	Rice	plastid	49.53	21.13
TraesCS5D01G071300.1	Wheat	plastid	47.64	21.09
Zm00001d030962_P001	Maize	plastid	48.58	20.4
HORVU5Hr1G015050.6	Barley	mitochondrion, plastid	47.64	20.16
CDY08271	Canola	mitochondrion, plastid	22.17	12.18
CDY26077	Canola	mitochondrion, plastid	21.7	11.92
VIT_12s0055g01120.t01	Wine grape	cytosol	4.25	6.72
KRH68746	Soybean	cytosol, peroxisome, plastid	1.89	3.42

Protein Annotations

EnsemblPlants:CDY42167	EnsemblPlantsGene:GSBRNA2T00074356001	Gene3D:3.90.660.10	PANTHER:PTHR16128	PANTHER:PTHR16128:SF8	ProteinID:CDY42167
ProteinID:CDY42167.1	SignalP:SignalP-noTM	UniParc:UPI0004EE88D7	UniProt:A0A078HWH2	MapMan:35.2	:

Description

BnaC05g40520DBnaC05g40520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWH2]

Coordinates

chrLK032516:-:221378..222765

Molecular Weight (calculated)

23532.6 Da

IEP (calculated)

7.144

GRAVY (calculated)

0.196

Length

212 amino acids

Sequence
(BLAST)

001: MVPPATERWC WALIRILKGL VFDHAAQFFI ADDSRLIQYV DGWLEKGLVR EWKGVVGELE VGGNFSQFPP SWPPRYIAVH GMRSLADSLL LESIVIAHNG
101: KNGTSRGQFD VIIIAHNGKC ANRLLSASGL PLVAKQMKNF DLSSIWALLA AFDDPLPTVN FEGAFVKGVE SLSWMGNNSA KLASLEQLRL VINLPSSTMI
201: WFHLYTSHLV DV

Best Arabidopsis Sequence Match ( AT3G04650.1 )
(BLAST)

001: MATSLMSLSS SFLQPLKLKT LAQPRNTDLS TTRKIITTCD SQNNTGKSNP SSRNPNFQKR RNSSKYGTSR RSILKKSFLQ EQVTFTARVS DDPHVAIIGG
101: GMAGLVCALN LEARGVQSTV FDTGIHGLGG RLGTRIIEPQ GLIFDHAAQF FTADDSRFIK LVDGWLEKGL VREWKGAVGE LEIGGSFSQF PSSSPPRYIA
201: ANGMRSLADS LLLESQMVNL VRPCWISKLE PLNGMWHLSE NGTPRGQFDV IVIAHNGKCA NRLLSASGLP LVAKQMKKLD LSSIWALLAA FDDPLPTVNF
301: EGAFVKGVES LSWMGNNSAK LGNGRTPPHC WTFFSTAAYG KQNKVPQENI PTVTAEKVKA GMLQGVEIAL GLPEGSLPKP VYTRLQLWGA ALPKNTPAVP
401: CIFDPQGRAG ICGDWLLGSN LESAAISGAA LGNHIAEFLQ NGEANPEEFA IGLHDRLSPL AGHDIGQFPG LTSVGEKEEA NAYQLL

Arabidopsis Description

AT3g04650/F7O18_13 [Source:UniProtKB/TrEMBL;Acc:Q9SR09]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.