Factsheet for PGSC0003DMT400029217

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	plastid
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005620.2.1	Tomato	plastid	97.83	97.83
VIT_19s0027g00380.t01	Wine grape	plastid	66.67	66.67
KRH43821	Soybean	plastid	65.58	65.58
AT1G56000.1	Thale cress	plastid	62.6	60.16
GSMUA_Achr7P07990_001	Banana	plastid	60.43	59.79
CDY26077	Canola	mitochondrion, plastid	61.79	59.07
CDY08271	Canola	mitochondrion, plastid	61.25	58.55
Bra037093.1-P	Field mustard	mitochondrion, plastid	60.7	58.03
Os03t0784000-03	Rice	plastid	58.81	56.81
TraesCS5B01G423800.1	Wheat	plastid	57.18	56.12
Zm00001d034338_P001	Maize	plastid	56.1	54.91
KXG37426	Sorghum	plastid	55.83	54.5
TraesCS5A01G421900.3	Wheat	cytosol, peroxisome, plastid	47.7	54.32
TraesCS5D01G430200.1	Wheat	peroxisome, plastid	57.72	51.95
HORVU5Hr1G103040.10	Barley	mitochondrion, peroxisome	54.2	45.66
AT1G55980.1	Thale cress	mitochondrion	52.57	41.45
HORVU5Hr1G103050.2	Barley	cytosol, plastid	10.84	24.24
PGSC0003DMT400070768	Potato	plastid	26.83	22.15

Protein Annotations

EnsemblPlants:PGSC0003DMT400029217	EnsemblPlantsGene:PGSC0003DMG400011238	EntrezGene:102586397	Gene3D:3.50.50.60	Gene3D:3.90.660.10	InterPro:FAD/NAD-bd_sf
InterPro:IPR036188	PANTHER:PTHR16128	PANTHER:PTHR16128:SF5	PFAM:PF13450	PGSC:PGSC0003DMG400011238	PRINTS:PR00419
RefSeq:XP_006352578.2	SUPFAM:SSF51905	UniParc:UPI000295C3B0	UniProt:M1ASF4	MapMan:35.2	:

Description

Amine oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400011238]

Coordinates

chr10:-:684968..689698

Molecular Weight (calculated)

40475.5 Da

IEP (calculated)

7.321

GRAVY (calculated)

-0.173

Length

369 amino acids

Sequence
(BLAST)

001: MANVAAKVAV IGSGISGAVC ASTLAKNGIS VTIFESGRGP GGRMSQRREM TEDGRELHFD HGVPYFSAKN PDVLRLICEW QSKGLVAEWK EKFATFDCDS
101: KQFLDIEQEG LEKKYVGVPG MNSICKSLCQ EPGVQSRFGV GVGRLEWLDN EDSWSLMGLN GESLGYFKGV VTSDKSTFSQ RFTNVTGKPV PIDMEKFPEI
201: SLKMTEIPVN PCFALMLAFE EPLTEIPIRG FSFKSSKVLH RAFCDSSKPG RSHNSERWVL HSTAEYAQDV IAQTGLQKPS SATLTKVAEE LFQEFQSTKL
301: SIPQAFFKKA HRWGSAFPAI SVAENEKCLW DAKKRLAVCG DFCVSPNVEG AIISGLAAAA KCSEVLCRL

Best Arabidopsis Sequence Match ( AT1G56000.1 )
(BLAST)

001: MAATTISPAI RKQMSSVAVA MKVAVIGSGI SGAVCASTLA RNGVSVTIFD SGRGPGGRMS QRREIGEDGK ELMFDHGAPF FCVSNSDAMA LVHEWESRGF
101: VSEWKQVFGS FDCASNKFLG IQQEGDAKKY VGVPGMNSIS KALCNESGVK SMFGTGIAKM EWLEEEIPWL LTDSKGENLG RFDGVVASDK NIVSPRFTQV
201: TGLPPPLDLS LVPELATKLQ NIPVLPCFSL MLAFKEPLSS IPVKGLSFKN SEILSWAHCE STKPGRSTDS ERWILHSTPD YANSVIAKTG LQKLSSETLN
301: KISEEMFKEF QCSGLVSSLP FFMKAHRWGS AFPAKSIAVE ERCLWDRNRN LAICGDFCVS PNVEGAILSG LAAASKLLQT SSCL

Arabidopsis Description

AT1G56000 protein [Source:UniProtKB/TrEMBL;Acc:Q8VYV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.