Factsheet for Zm00001d034338_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37426	Sorghum	plastid	92.04	91.8
Os03t0784000-03	Rice	plastid	84.35	83.25
TraesCS5B01G423800.1	Wheat	plastid	80.9	81.12
TraesCS5A01G421900.3	Wheat	cytosol, peroxisome, plastid	68.44	79.63
TraesCS5D01G430200.1	Wheat	peroxisome, plastid	80.64	74.15
HORVU5Hr1G103040.10	Barley	mitochondrion, peroxisome	75.86	65.3
GSMUA_Achr7P07990_001	Banana	plastid	64.46	65.15
VIT_19s0027g00380.t01	Wine grape	plastid	57.56	58.81
Solyc10g005620.2.1	Tomato	plastid	55.44	56.64
KRH43821	Soybean	plastid	54.91	56.1
PGSC0003DMT400029217	Potato	plastid	54.91	56.1
AT1G56000.1	Thale cress	plastid	56.23	55.21
CDY08271	Canola	mitochondrion, plastid	54.64	53.37
CDY26077	Canola	mitochondrion, plastid	54.38	53.11
Bra037093.1-P	Field mustard	mitochondrion, plastid	54.38	53.11
AT1G55980.1	Thale cress	mitochondrion	48.54	39.1
HORVU5Hr1G103050.2	Barley	cytosol, plastid	16.18	36.97
Zm00001d030962_P001	Maize	plastid	27.06	20.2

Protein Annotations

EnsemblPlants:Zm00001d034338_P001	EnsemblPlants:Zm00001d034338_T001	EnsemblPlantsGene:Zm00001d034338	Gene3D:3.50.50.60	Gene3D:3.90.660.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0016829	InterPro:FAD/NAD-bd_sf	InterPro:IPR036188	PANTHER:PTHR16128	PANTHER:PTHR16128:SF5
PFAM:PF13450	ProteinID:ONM09981.1	SEG:seg	SUPFAM:SSF51905	TMHMM:TMhelix	UniParc:UPI000221CFB5
UniProt:A0A1D6L6Q7	MapMan:35.2	:	:	:	:

Description

Deoxyribodipyrimidine photolyase

Coordinates

chr1:+:290204343..290207367

Molecular Weight (calculated)

40024.7 Da

IEP (calculated)

7.556

GRAVY (calculated)

0.074

Length

377 amino acids

Sequence
(BLAST)

001: MSSAAAAANV AVIGGGISGS VCASLLAARG VAVTLFDSGR GAGGRMAQRR EVMEDGSELR FDHGAPYFTV TNGEVARVVG GWEARGIVAE WKATFACFDL
101: ATGKFTDFEK EGTAKKYVGV PAMNSICKSL CLEDGVVAKF GVTVGKMDWL QDRSSWSLAS LDGKDLGYFD YVVATDKNIA SPAFSGLTGR PPPLDLSSFP
201: RLPTALQDIP VRPCFALMVA FSEPLATVPV HGFSFNNSNS LSWAFCNSSK PGRACVPPNR QSWVLHSTTE YASKVINNIG PRKPSAEALA KVAEELFREF
301: QATGLSIPRP IFLKAHRWGA AFPAIAISGD DKCVWDKSTN LAICGDFCTS PSVEGAVLSA TRGVSEILEC LRCPSSI

Best Arabidopsis Sequence Match ( AT1G56000.1 )
(BLAST)

001: MAATTISPAI RKQMSSVAVA MKVAVIGSGI SGAVCASTLA RNGVSVTIFD SGRGPGGRMS QRREIGEDGK ELMFDHGAPF FCVSNSDAMA LVHEWESRGF
101: VSEWKQVFGS FDCASNKFLG IQQEGDAKKY VGVPGMNSIS KALCNESGVK SMFGTGIAKM EWLEEEIPWL LTDSKGENLG RFDGVVASDK NIVSPRFTQV
201: TGLPPPLDLS LVPELATKLQ NIPVLPCFSL MLAFKEPLSS IPVKGLSFKN SEILSWAHCE STKPGRSTDS ERWILHSTPD YANSVIAKTG LQKLSSETLN
301: KISEEMFKEF QCSGLVSSLP FFMKAHRWGS AFPAKSIAVE ERCLWDRNRN LAICGDFCVS PNVEGAILSG LAAASKLLQT SSCL

Arabidopsis Description

AT1G56000 protein [Source:UniProtKB/TrEMBL;Acc:Q8VYV2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.