Factsheet for Bra015583.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
nucleus 2
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane, plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007982.1-P
Bra007983.1-P
Bra016143.1-P
Bra018036.1-P
Bra029917.1-P
Bra034380.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07500.1	Bra007982.1-P	AT1G71380.1	20706207
AT1G07500.1	Bra007983.1-P	AT1G71380.1	20706207
AT1G07500.1	Bra016143.1-P	AT1G71380.1	20706207
AT1G07500.1	Bra034380.1-P	AT2G27970.1	20706207
AT1G07500.1	Bra018036.1-P	AT3G48750.1	20706207
AT1G07500.1	Bra029917.1-P	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71405	Canola	cytosol	100.0	100.0
CDY06711	Canola	cytosol	97.65	97.65
CDY10280	Canola	cytosol	94.12	94.12
Bra030687.1-P	Field mustard	cytosol	71.76	71.76
AT1G07500.1	Thale cress	cytosol	58.82	60.98
TraesCS3B01G393400.1	Wheat	cytosol	42.35	43.9
TraesCS5B01G495400.1	Wheat	nucleus	42.35	43.37
Os03t0822400-01	Rice	nucleus	44.71	42.7
HORVU3Hr1G086110.1	Barley	cytosol	40.0	42.5
Bra009606.1-P	Field mustard	nucleus	36.47	42.47
Bra028880.1-P	Field mustard	nucleus	36.47	42.47
TraesCS5D01G495900.1	Wheat	cytosol	43.53	41.57
GSMUA_Achr6P17910_001	Banana	nucleus	37.65	41.56
TraesCS3D01G354800.1	Wheat	cytosol	40.0	40.96
TraesCS3A01G361000.1	Wheat	cytosol	38.82	40.74
EER93180	Sorghum	cytosol	42.35	38.71
Os01t0843700-01	Rice	cytosol	42.35	38.71
Zm00001d042902_P001	Maize	cytosol	40.0	37.78
TraesCS5A01G482300.1	Wheat	nucleus	38.82	37.08
GSMUA_Achr2P16400_001	Banana	cytosol	37.65	36.78
Zm00001d012956_P001	Maize	cytosol	37.65	33.68
HORVU5Hr1G113790.1	Barley	cytosol, nucleus	43.53	33.64
HORVU5Hr1G113780.1	Barley	cytosol, nucleus	43.53	32.74
KXG33680	Sorghum	mitochondrion	42.35	29.75

Protein Annotations

EnsemblPlants:Bra015583.1	EnsemblPlants:Bra015583.1-P	EnsemblPlantsGene:Bra015583	PANTHER:PTHR33142	PANTHER:PTHR33142:SF15	UniParc:UPI0002544BCF
UniProt:M4DGF9	MapMan:13.1.1.3.2	:	:	:	:

Description

AT1G07500 (E=1e-011) | unknown protein

Coordinates

chrA10:+:876401..876658

Molecular Weight (calculated)

9557.4 Da

IEP (calculated)

6.422

GRAVY (calculated)

-0.649

Length

85 amino acids

Sequence
(BLAST)

1: MDKGFGCYDS EKVVVDDDYD VGCKTPTRDE CRIPAYPLCP PPVRRKRSIV LGKKLEPPKN GYFQPPDLEL FFTAAATSRQ QESCA

Best Arabidopsis Sequence Match ( AT1G07500.1 )
(BLAST)

1: MEEKNYDDGD TVTVDDDYQM GCTTPTRDDC RIPAYPPCPP PVRRKRSLLG FGKKREPPKK GYFQPPDLDL FFSVVAASQA AT

Arabidopsis Description

SMR5Cyclin-dependent protein kinase inhibitor SMR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNX4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.