Factsheet for Bra009606.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007982.1-P
Bra007983.1-P
Bra011899.1-P
Bra016143.1-P
Bra018036.1-P
Bra029917.1-P
Bra033563.1-P
Bra037093.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02220.1	Bra037093.1-P	AT1G56000.1	20706207
AT5G02220.1	Bra007982.1-P	AT1G71380.1	20706207
AT5G02220.1	Bra007983.1-P	AT1G71380.1	20706207
AT5G02220.1	Bra016143.1-P	AT1G71380.1	20706207
AT5G02220.1	Bra011899.1-P	AT3G45970.1	20706207
AT5G02220.1	Bra033563.1-P	AT3G45970.1	20706207
AT5G02220.1	Bra018036.1-P	AT3G48750.1	20706207
AT5G02220.1	Bra029917.1-P	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10460	Canola	nucleus	100.0	100.0
CDY40340	Canola	nucleus	100.0	100.0
AT5G02220.1	Thale cress	cytosol, nucleus, plastid	86.3	87.5
Bra028880.1-P	Field mustard	nucleus	67.12	67.12
KRH49124	Soybean	cytosol, nucleus, plastid	43.84	49.23
GSMUA_Achr6P17910_001	Banana	nucleus	50.68	48.05
TraesCS5B01G495400.1	Wheat	nucleus	53.42	46.99
TraesCS5A01G482300.1	Wheat	nucleus	56.16	46.07
TraesCS5D01G495900.1	Wheat	cytosol	54.79	44.94
Os03t0822400-01	Rice	nucleus	52.05	42.7
HORVU3Hr1G086110.1	Barley	cytosol	45.21	41.25
TraesCS3A01G361000.1	Wheat	cytosol	43.84	39.51
GSMUA_Achr2P16400_001	Banana	cytosol	46.58	39.08
TraesCS3B01G393400.1	Wheat	cytosol	43.84	39.02
EER93180	Sorghum	cytosol	49.32	38.71
TraesCS3D01G354800.1	Wheat	cytosol	43.84	38.55
Zm00001d042902_P001	Maize	cytosol	45.21	36.67
Bra015583.1-P	Field mustard	cytosol	42.47	36.47
Os01t0843700-01	Rice	cytosol	45.21	35.48
HORVU5Hr1G113790.1	Barley	cytosol, nucleus	53.42	35.45
Bra030687.1-P	Field mustard	cytosol	41.1	35.29
Zm00001d012956_P001	Maize	cytosol	45.21	34.74
HORVU5Hr1G113780.1	Barley	cytosol, nucleus	53.42	34.51
KXG33680	Sorghum	mitochondrion	43.84	26.45

Protein Annotations

EnsemblPlants:Bra009606.1	EnsemblPlants:Bra009606.1-P	EnsemblPlantsGene:Bra009606	PANTHER:PTHR33142	PANTHER:PTHR33142:SF15	UniParc:UPI0002547E03
UniProt:M4CZF9	MapMan:13.1.1.3.2	:	:	:	:

Description

AT5G02220 (E=1e-033) | unknown protein

Coordinates

chrA10:+:17421133..17421354

Molecular Weight (calculated)

8406.1 Da

IEP (calculated)

8.884

GRAVY (calculated)

-0.899

Length

73 amino acids

Sequence
(BLAST)

1: MEEVVERTTE MAEEGCTTPR SSKYRIPVSL VCPPPPRKKS MVARKRDPPR NGYFQPPDLE TLFYAHPRRE ACA

Best Arabidopsis Sequence Match ( AT5G02220.1 )
(BLAST)

1: MEVVERKTEM AEEGCTTPRS TMYRIPVASV CPPPPRKKLM VVRKRDPPRN GYFQPPDLET LFYAQPRREA CA

Arabidopsis Description

SMR4Cyclin-dependent protein kinase inhibitor SMR4 [Source:UniProtKB/Swiss-Prot;Acc:Q1JPP8]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.