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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • golgi 1
  • plasma membrane 1
  • endoplasmic reticulum 1
  • vacuole 1
  • cytosol 2
  • nucleus 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:secretory
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra007982.1-P
Bra007983.1-P
Bra016143.1-P
Bra018036.1-P
Bra029917.1-P
Bra034380.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G07500.1 Bra007982.1-P AT1G71380.1 20706207
AT1G07500.1 Bra007983.1-P AT1G71380.1 20706207
AT1G07500.1 Bra016143.1-P AT1G71380.1 20706207
AT1G07500.1 Bra034380.1-P AT2G27970.1 20706207
AT1G07500.1 Bra018036.1-P AT3G48750.1 20706207
AT1G07500.1 Bra029917.1-P AT3G48750.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY15615 Canola cytosol 100.0 100.0
Bra015583.1-P Field mustard cytosol 71.76 71.76
AT1G07500.1 Thale cress cytosol 56.47 58.54
Bra009606.1-P Field mustard nucleus 35.29 41.1
Os03t0822400-01 Rice nucleus 42.35 40.45
GSMUA_Achr6P17910_001 Banana nucleus 36.47 40.26
TraesCS3B01G393400.1 Wheat cytosol 38.82 40.24
HORVU3Hr1G086110.1 Barley cytosol 37.65 40.0
TraesCS3A01G361000.1 Wheat cytosol 37.65 39.51
TraesCS3D01G354800.1 Wheat cytosol 37.65 38.55
Bra028880.1-P Field mustard nucleus 32.94 38.36
TraesCS5B01G495400.1 Wheat nucleus 36.47 37.35
Zm00001d042902_P001 Maize cytosol 38.82 36.67
EER93180 Sorghum cytosol 38.82 35.48
TraesCS5D01G495900.1 Wheat cytosol 36.47 34.83
Os01t0843700-01 Rice cytosol 37.65 34.41
TraesCS5A01G482300.1 Wheat nucleus 35.29 33.71
GSMUA_Achr2P16400_001 Banana cytosol 32.94 32.18
Zm00001d012956_P001 Maize cytosol 34.12 30.53
HORVU5Hr1G113790.1 Barley cytosol, nucleus 36.47 28.18
HORVU5Hr1G113780.1 Barley cytosol, nucleus 36.47 27.43
KXG33680 Sorghum mitochondrion 38.82 27.27
Protein Annotations
EnsemblPlants:Bra030687.1EnsemblPlants:Bra030687.1-PEnsemblPlantsGene:Bra030687PANTHER:PTHR33142PANTHER:PTHR33142:SF15SEG:seg
UniParc:UPI0002546D67UniProt:M4EPG7MapMan:13.1.1.3.2:::
Description
No Description!
Coordinates
chrA08:+:20801723..20801980
Molecular Weight (calculated)
9503.3 Da
IEP (calculated)
7.716
GRAVY (calculated)
-0.733
Length
85 amino acids
Sequence
(BLAST)
1: MDNGFSCYGG ETEAVDDDCH VGCKTPTREE CRIPVCPPCP PPVRRKRSIH FGKKRETPKN GYFQPPELEL FFSAVAASRK QEGCV
Best Arabidopsis Sequence Match ( AT1G07500.1 )
(BLAST)
1: MEEKNYDDGD TVTVDDDYQM GCTTPTRDDC RIPAYPPCPP PVRRKRSLLG FGKKREPPKK GYFQPPDLDL FFSVVAASQA AT
Arabidopsis Description
SMR5Cyclin-dependent protein kinase inhibitor SMR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNX4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.